Miyakogusa Predicted Gene

Lj6g3v1984360.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1984360.1 Non Chatacterized Hit- tr|B9SHK0|B9SHK0_RICCO
Pentatricopeptide repeat-containing protein, putative
,34.64,1e-18,PPR,Pentatricopeptide repeat; PPR_3,Pentatricopeptide
repeat; seg,NULL; PPR: pentatricopeptide repea,CUFF.60386.1
         (328 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G62470.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   259   2e-69
AT5G14820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   258   3e-69
AT3G62540.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   255   3e-68
AT5G15010.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    97   1e-20
AT1G71060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    94   9e-20
AT3G22670.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    91   1e-18
AT1G77360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    89   5e-18
AT3G49730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    79   6e-15
AT1G26500.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    78   7e-15
AT5G65820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    77   2e-14
AT5G06400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    74   1e-13
AT3G04130.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    70   2e-12
AT3G04130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    70   2e-12
AT1G52640.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    70   2e-12
AT1G73400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    69   4e-12
AT3G15200.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    68   9e-12
AT3G02490.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    63   2e-10
AT5G15980.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    60   3e-09
AT3G60050.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    59   3e-09
AT1G74750.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    59   5e-09
AT1G18900.3 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    59   6e-09
AT1G18900.2 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    59   7e-09
AT1G18900.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    59   7e-09
AT5G66631.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    58   8e-09
AT5G43820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    58   8e-09
AT5G14080.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    53   2e-07
AT2G01390.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    50   2e-06
AT2G17525.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    50   3e-06
AT5G11310.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    49   3e-06
AT3G06920.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    49   4e-06
AT1G55630.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    49   4e-06
AT1G03560.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    48   9e-06

>AT3G62470.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:23106600-23108399 REVERSE
           LENGTH=599
          Length = 599

 Score =  259 bits (662), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 123/157 (78%), Positives = 141/157 (89%)

Query: 159 SCADPDEVDRVCKVIDELFALDRNMEAVLDECGVKLSHDLVVDVLQRFKHARKPAFRFFC 218
           S  +P+EV+RVCKVIDELFALDRNMEAVLDE  + LSHDL+V+VL+RF+HARKPAFRFFC
Sbjct: 124 SSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFC 183

Query: 219 WAGQRPGFAHDSRTYNSMMGILGKTRQFETMVAMLEEMGEKGLLTMETFSIAIKAFALAK 278
           WA +R GFAHDSRTYNSMM IL KTRQFETMV++LEEMG KGLLTMETF+IA+KAFA AK
Sbjct: 184 WAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAK 243

Query: 279 ERKKAVGIFDLMKKHKFKVGVDAVNFLLGSLVAAKLG 315
           ERKKAVGIF+LMKK+KFK+GV+ +N LL SL  AKLG
Sbjct: 244 ERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLG 280


>AT5G14820.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:4792072-4793868 REVERSE
           LENGTH=598
          Length = 598

 Score =  258 bits (660), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 123/157 (78%), Positives = 141/157 (89%)

Query: 159 SCADPDEVDRVCKVIDELFALDRNMEAVLDECGVKLSHDLVVDVLQRFKHARKPAFRFFC 218
           S  +P+EV+RVCKVIDELFALDRNMEAVLDE  + LSHDL+V+VL+RF+HARKPAFRFFC
Sbjct: 123 SSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFC 182

Query: 219 WAGQRPGFAHDSRTYNSMMGILGKTRQFETMVAMLEEMGEKGLLTMETFSIAIKAFALAK 278
           WA +R GFAHDSRTYNSMM IL KTRQFETMV++LEEMG KGLLTMETF+IA+KAFA AK
Sbjct: 183 WAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAK 242

Query: 279 ERKKAVGIFDLMKKHKFKVGVDAVNFLLGSLVAAKLG 315
           ERKKAVGIF+LMKK+KFK+GV+ +N LL SL  AKLG
Sbjct: 243 ERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLG 279


>AT3G62540.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:23133514-23135313 REVERSE
           LENGTH=599
          Length = 599

 Score =  255 bits (651), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 122/157 (77%), Positives = 140/157 (89%)

Query: 159 SCADPDEVDRVCKVIDELFALDRNMEAVLDECGVKLSHDLVVDVLQRFKHARKPAFRFFC 218
           S  +P+EV+RVCKVIDELFALDRNMEAVLDE  + LSHDL+V+VL+RF+HARKPAFRFFC
Sbjct: 124 SSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFC 183

Query: 219 WAGQRPGFAHDSRTYNSMMGILGKTRQFETMVAMLEEMGEKGLLTMETFSIAIKAFALAK 278
           WA +R GFAH SRTYNSMM IL KTRQFETMV++LEEMG KGLLTMETF+IA+KAFA AK
Sbjct: 184 WAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAK 243

Query: 279 ERKKAVGIFDLMKKHKFKVGVDAVNFLLGSLVAAKLG 315
           ERKKAVGIF+LMKK+KFK+GV+ +N LL SL  AKLG
Sbjct: 244 ERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLG 280


>AT5G15010.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:4857241-4858959 FORWARD
           LENGTH=572
          Length = 572

 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 90/169 (53%), Gaps = 17/169 (10%)

Query: 162 DPDEVDRVCKVIDELFALD---------------RNMEAVLDECGVKLSHDLVVDVLQRF 206
           D  ++D  C + DEL + D               + +   L+EC VK S++LVV++L R 
Sbjct: 78  DESDIDLGCSISDELVSEDVGKISKLVKDCGSDRKELRNKLEECDVKPSNELVVEILSRV 137

Query: 207 KHARKPAFRFFCWAGQRPGFAHDSRTYNSMMGILGKTRQFETMVAMLEEMGE--KGLLTM 264
           ++  + AF FF WAG++ G+    R Y+SM+ ILGK R+F+T   +++EM +    L+  
Sbjct: 138 RNDWETAFTFFVWAGKQQGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNS 197

Query: 265 ETFSIAIKAFALAKERKKAVGIFDLMKKHKFKVGVDAVNFLLGSLVAAK 313
           +T  I I+ +    +  KA+  F   K+ K ++G+D    LL +L   K
Sbjct: 198 QTLLIMIRKYCAVHDVGKAINTFHAYKRFKLEMGIDDFQSLLSALCRYK 246


>AT1G71060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:26805651-26807183 REVERSE
           LENGTH=510
          Length = 510

 Score = 94.4 bits (233), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 91/149 (61%), Gaps = 2/149 (1%)

Query: 165 EVDRVCKVIDELFALDRNMEAVLDECGVKLSHDLVVDVLQRFKHARKPAFRFFCWAGQRP 224
           + +R+CK++ +    D  +E +L+E  VKLS  L+ +VL++  +A   A   F WA  + 
Sbjct: 65  DAERICKILTKF--TDSKVETLLNEASVKLSPALIEEVLKKLSNAGVLALSVFKWAENQK 122

Query: 225 GFAHDSRTYNSMMGILGKTRQFETMVAMLEEMGEKGLLTMETFSIAIKAFALAKERKKAV 284
           GF H +  YN+++  LGK +QF+ + +++++M  K LL+ ETF++  + +A A++ K+A+
Sbjct: 123 GFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKLLSKETFALISRRYARARKVKEAI 182

Query: 285 GIFDLMKKHKFKVGVDAVNFLLGSLVAAK 313
           G F  M++  FK+     N +L +L  ++
Sbjct: 183 GAFHKMEEFGFKMESSDFNRMLDTLSKSR 211


>AT3G22670.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:8017771-8019459 REVERSE
           LENGTH=562
          Length = 562

 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 85/151 (56%), Gaps = 4/151 (2%)

Query: 164 DEVDRVCKVIDELFALDRNMEAVLDECGVKLSHDLVVDVLQRFKHARKPAFRFFCWAGQR 223
           +++D+VC  +++      ++   L +C V ++  LV+ VL+RF +    A+ FF WA  +
Sbjct: 100 EDIDKVCDFLNKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWANSQ 159

Query: 224 PGFAHDSRTYNSMMGILGKTRQFETMVAMLEEMG---EKGLLTMETFSIAIKAFALAKER 280
            G+ H   TYN+M+ +LGK R F+ M  ++ EM    E  L+T++T S  ++  A + + 
Sbjct: 160 TGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKY 219

Query: 281 KKAVGIF-DLMKKHKFKVGVDAVNFLLGSLV 310
            KAV  F ++ K +  K    A+N L+ +LV
Sbjct: 220 NKAVDAFLEMEKSYGVKTDTIAMNSLMDALV 250


>AT1G77360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:29071983-29073536 REVERSE
           LENGTH=517
          Length = 517

 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 81/131 (61%)

Query: 183 MEAVLDECGVKLSHDLVVDVLQRFKHARKPAFRFFCWAGQRPGFAHDSRTYNSMMGILGK 242
           +++ LD+ G+++S ++V DVL RF++A    +RFF W+ ++  + H  R Y+ M+    K
Sbjct: 87  LDSALDQSGLRVSQEVVEDVLNRFRNAGLLTYRFFQWSEKQRHYEHSVRAYHMMIESTAK 146

Query: 243 TRQFETMVAMLEEMGEKGLLTMETFSIAIKAFALAKERKKAVGIFDLMKKHKFKVGVDAV 302
            RQ++ M  ++  M +K +L +ETF I ++ +A A++  +A+  F++M+K+     + A 
Sbjct: 147 IRQYKLMWDLINAMRKKKMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAF 206

Query: 303 NFLLGSLVAAK 313
           N LL +L  +K
Sbjct: 207 NGLLSALCKSK 217


>AT3G49730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:18445730-18447646 REVERSE
           LENGTH=638
          Length = 638

 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 6/150 (4%)

Query: 165 EVDRVCKVIDELFALDRNMEAVLDECGVKLSHDLVVDVLQRFKHARKPAFRFFCWAGQRP 224
           EV+++ +++    +    +E  L+E G+ L   L++ VL R   A    +RFF WA ++P
Sbjct: 66  EVEKIYRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLWATKQP 125

Query: 225 GFAHDSRTYNSMMGILGKTRQFETMVAMLEEMGEKG--LLTMETFSIAIKAFALAKERKK 282
           G+ H      SM+ IL K RQF  +  ++EEM +    L+  E F + ++ FA A   KK
Sbjct: 126 GYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKK 185

Query: 283 AVGIFDLMKKHKFKVGVDAVNFLLGSLVAA 312
           AV + D M K+    G++   ++ G L+ A
Sbjct: 186 AVEVLDEMPKY----GLEPDEYVFGCLLDA 211


>AT1G26500.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:9158380-9159897 FORWARD
           LENGTH=505
          Length = 505

 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 2/155 (1%)

Query: 162 DPDEVDRVCKVI-DELFALDRNMEAVLDECGVKLSHDLVVDVLQRFKHARKPAFRFFCWA 220
           + D + RVC ++  +  + D  + + L     +L+H+  + V   F  + +P  RFF ++
Sbjct: 42  NQDHLLRVCTILYQQQNSPDSRLVSKLSSTKFQLTHEFFLQVCNNFPLSWRPVHRFFLYS 101

Query: 221 -GQRPGFAHDSRTYNSMMGILGKTRQFETMVAMLEEMGEKGLLTMETFSIAIKAFALAKE 279
               P F H S T N M+ I+G +R  +    + +E+G++GL+  +TF I +K  A A+E
Sbjct: 102 QTHHPDFTHTSTTSNKMLAIIGNSRNMDLFWELAQEIGKRGLVNDKTFRIVLKTLASARE 161

Query: 280 RKKAVGIFDLMKKHKFKVGVDAVNFLLGSLVAAKL 314
            KK V  F LM    +   V+ +N  + +L   KL
Sbjct: 162 LKKCVNYFHLMNGFGYLYNVETMNRGVETLCKEKL 196


>AT5G65820.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:26339876-26341789 REVERSE
           LENGTH=637
          Length = 637

 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 6/150 (4%)

Query: 165 EVDRVCKVIDELFALDRNMEAVLDECGVKLSHDLVVDVLQRFKHARKPAFRFFCWAGQRP 224
           +V++  +++ +  +    +E  L+E GV+L   L+  VL R   A    +RFF WA ++P
Sbjct: 82  DVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQP 141

Query: 225 GFAHDSRTYNSMMGILGKTRQFETMVAMLEEMGEKG--LLTMETFSIAIKAFALAKERKK 282
            + H    Y SM+ IL K RQF  +  ++EEM ++   L+  E F + ++ FA A   KK
Sbjct: 142 RYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKK 201

Query: 283 AVGIFDLMKKHKFKVGVDAVNFLLGSLVAA 312
           A+ + D M     K G +   ++ G L+ A
Sbjct: 202 AIEVLDEMP----KFGFEPDEYVFGCLLDA 227


>AT5G06400.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:1955959-1959051 FORWARD
           LENGTH=1030
          Length = 1030

 Score = 74.3 bits (181), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 2/134 (1%)

Query: 159 SCADPDEVDRVCKVIDELFALDRNMEAVLDECGVKLSHDLVVDVLQRFKHARKPAFRFFC 218
           S  D  +V  +C+V+      +R  EA L++  V+ + +LVV+VL+  K       RFF 
Sbjct: 608 SAVDKMDVQEICRVLSSSRDWERTQEA-LEKSTVQFTPELVVEVLRHAKIQGNAVLRFFS 666

Query: 219 WAGQRPGFAHDSRTYNSMMGILGKTRQFETMVAMLEEMGEKG-LLTMETFSIAIKAFALA 277
           W G+R G+ H+S  YN  + + G  + F+ M ++  EM  +G L+T +T++I I  +   
Sbjct: 667 WVGKRNGYKHNSEAYNMSIKVAGCGKDFKQMRSLFYEMRRQGCLITQDTWAIMIMQYGRT 726

Query: 278 KERKKAVGIFDLMK 291
                A+  F  MK
Sbjct: 727 GLTNIAIRTFKEMK 740



 Score = 73.9 bits (180), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 8/159 (5%)

Query: 164 DEVDRVCKVIDELFALDR------NMEAVLDECGVKLSHDLVVDVLQRFKHARKPAFRFF 217
           +EVD    V+ E+ ++ R      +ME  L++   +   ++V +VL+R       A RFF
Sbjct: 118 EEVD-FSPVVHEITSVVRGDDVLVSMEDRLEKLSFRFEPEIVENVLKRCFKVPHLAMRFF 176

Query: 218 CWAGQRPGFAHDSRTYNSMMGILGKTRQFETMVAMLEEMGEKGL-LTMETFSIAIKAFAL 276
            W  Q+ GF+H    YN+M+ I G+ R  + +  ++ EM + G    + T++I I  +  
Sbjct: 177 NWVKQKDGFSHRVGIYNTMLSIAGEARNLDMVDELVSEMEKNGCDKDIRTWTILISVYGK 236

Query: 277 AKERKKAVGIFDLMKKHKFKVGVDAVNFLLGSLVAAKLG 315
           AK+  K + +F+ M+K  F++   A N ++ SL  A  G
Sbjct: 237 AKKIGKGLLVFEKMRKSGFELDATAYNIMIRSLCIAGRG 275


>AT3G04130.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:1084136-1085662 FORWARD
           LENGTH=508
          Length = 508

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 64/122 (52%)

Query: 192 VKLSHDLVVDVLQRFKHARKPAFRFFCWAGQRPGFAHDSRTYNSMMGILGKTRQFETMVA 251
           V LS  LV  +L RF+   + A     WA    G  H S  Y+  + ILGK ++++ M  
Sbjct: 83  VNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDAYDMAVDILGKAKKWDRMKE 142

Query: 252 MLEEMGEKGLLTMETFSIAIKAFALAKERKKAVGIFDLMKKHKFKVGVDAVNFLLGSLVA 311
            +E M    L+T+ T +  ++ FA A E ++AVGIFD + +   +   +++N LL +L  
Sbjct: 143 FVERMRGDKLVTLNTVAKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCK 202

Query: 312 AK 313
            K
Sbjct: 203 EK 204


>AT3G04130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:1084136-1085662 FORWARD
           LENGTH=508
          Length = 508

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 64/122 (52%)

Query: 192 VKLSHDLVVDVLQRFKHARKPAFRFFCWAGQRPGFAHDSRTYNSMMGILGKTRQFETMVA 251
           V LS  LV  +L RF+   + A     WA    G  H S  Y+  + ILGK ++++ M  
Sbjct: 83  VNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDAYDMAVDILGKAKKWDRMKE 142

Query: 252 MLEEMGEKGLLTMETFSIAIKAFALAKERKKAVGIFDLMKKHKFKVGVDAVNFLLGSLVA 311
            +E M    L+T+ T +  ++ FA A E ++AVGIFD + +   +   +++N LL +L  
Sbjct: 143 FVERMRGDKLVTLNTVAKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCK 202

Query: 312 AK 313
            K
Sbjct: 203 EK 204


>AT1G52640.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:19608857-19610428 REVERSE
           LENGTH=523
          Length = 523

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 2/153 (1%)

Query: 163 PDEVDRVCKVIDELFALDRNMEAVLDECGVKLSHDLVVDVLQRFKHARKPAFRFFCWAGQ 222
           PD V+ + +V+ +      ++E  L     ++S +LV  VL+R K+   PA RFF WA +
Sbjct: 35  PDLVNEISRVLSDHRNPKDDLEHTLVAYSPRVSSNLVEQVLKRCKNLGFPAHRFFLWARR 94

Query: 223 RPGFAHDSRTYNSMMGILGKTRQFETMVAMLEEMGEKGL--LTMETFSIAIKAFALAKER 280
            P FAH   +Y+ ++ ILG ++QF  +   L E  E     ++ + F I  +A++ A   
Sbjct: 95  IPDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLP 154

Query: 281 KKAVGIFDLMKKHKFKVGVDAVNFLLGSLVAAK 313
            +A   F+ M +   K  VD ++ LL SL   K
Sbjct: 155 SEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKK 187


>AT1G73400.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:27598106-27599812 FORWARD
           LENGTH=568
          Length = 568

 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 5/89 (5%)

Query: 172 VIDELFALDRNMEAVLDECGVKLSHDLVVDVLQRFKHARKPAFRFFCWAGQRPGFAHDSR 231
           ++  L A D +ME  LDE  V L+  +V  +LQR ++  K AFRFF WAG +  ++H+  
Sbjct: 102 IMANLNAYD-DMEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPI 160

Query: 232 TYNSMMGILG----KTRQFETMVAMLEEM 256
            YN M+ IL     K +QF  ++ ML+ M
Sbjct: 161 AYNEMIDILSSTKYKNKQFRIVIDMLDYM 189


>AT3G15200.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:5117489-5119060 REVERSE
           LENGTH=523
          Length = 523

 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 71/123 (57%), Gaps = 3/123 (2%)

Query: 183 MEAVLDECGVKLSHDLVVDVLQRFKHARKPAFRFFCWAGQRPGFAHDSRTYNSMMGILGK 242
           ++ +LD+CG+ L+ +LV++V+ R +   KPA+       ++      S  YN ++ +LGK
Sbjct: 96  IKRILDKCGIDLTEELVLEVVNRNRSDWKPAYILSQLVVKQSVHLSSSMLYNEILDVLGK 155

Query: 243 TRQFETMVAMLEEMGEK-GLLTMETFSIAIKAFALAKERKKAVGIFDLMKKHKFKVGVDA 301
            R+FE    + +EM ++ G +  +T+ + +  +A A +  +AVG+F+  ++ +F +  D 
Sbjct: 156 MRRFEEFHQVFDEMSKRDGFVNEKTYEVLLNRYAAAHKVDEAVGVFE--RRKEFGIDDDL 213

Query: 302 VNF 304
           V F
Sbjct: 214 VAF 216


>AT3G02490.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:513607-515604 FORWARD
           LENGTH=665
          Length = 665

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 4/125 (3%)

Query: 167 DRVCKVI-DELFALDRNMEAVLDECGVKLSHDLVVDVLQRFKHARKPAFRFFCWAGQRPG 225
           +RVCK++  E++  D  +E  L +  ++   D+V  VL++     + A  FF W  +   
Sbjct: 219 NRVCKIVMKEVWGAD--VEKQLRDLKLEFKSDVVKMVLEKLDVDPRKALLFFRWIDESGS 276

Query: 226 FAHDSRTYNSMMGILGKTRQFETMVAMLEEMGEKGL-LTMETFSIAIKAFALAKERKKAV 284
           F HD +TYN+M  +LGK +  +    M+EE+   G  + MET+      F   K  K+AV
Sbjct: 277 FKHDEKTYNAMARVLGKEKFLDRFQHMIEEIRSAGYEMEMETYVRVSARFCQTKMIKEAV 336

Query: 285 GIFDL 289
            +F+ 
Sbjct: 337 ELFEF 341


>AT5G15980.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:5213290-5215296 FORWARD
           LENGTH=668
          Length = 668

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 4/125 (3%)

Query: 167 DRVCKVI-DELFALDRNMEAVLDECGVKLSHDLVVDVLQRFKHARKPAFRFFCWAGQRPG 225
           DRVCK++  E +  D  +E  + +  V+   DLV  +++R     + A  FF W  +   
Sbjct: 225 DRVCKIVMKEEWGDD--VEKRVRDLNVEFKSDLVKMIVERLDVEPRKALLFFRWIDESDL 282

Query: 226 FAHDSRTYNSMMGILGKTRQFETMVAMLEEMGEKGL-LTMETFSIAIKAFALAKERKKAV 284
           F HD +TYN+M  +LGK +  +    ++ EM   G  + +ET+      F   K  K+AV
Sbjct: 283 FKHDEKTYNAMARVLGKEKFLDRFQNIVVEMRSAGYEVEIETYVRVSTRFCQTKLIKEAV 342

Query: 285 GIFDL 289
            +F++
Sbjct: 343 DLFEI 347


>AT3G60050.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:22180231-22181652 REVERSE
           LENGTH=473
          Length = 473

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 74/142 (52%), Gaps = 10/142 (7%)

Query: 182 NMEAVLDECGVKLS----HDLVVDVLQRFKHARKP-----AFRFFCWAGQRPGFAHDSRT 232
           N ++VLDE  V++S     +++V +L+   +  K      A+RFF W+G++  F H   +
Sbjct: 92  NSKSVLDELNVRVSGLLVREVLVGILRNLSYDNKARCAKLAYRFFLWSGEQECFRHTVNS 151

Query: 233 YNSMMGILGKTRQFETMVAMLEEMGEKGL-LTMETFSIAIKAFALAKERKKAVGIFDLMK 291
           Y+ +M I  +  +++ M  +++EM + G   T  TF++ I +   A   K+AV  F   K
Sbjct: 152 YHLLMKIFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMKSK 211

Query: 292 KHKFKVGVDAVNFLLGSLVAAK 313
              ++    + N +L SL+  K
Sbjct: 212 TFNYRPFKHSYNAILNSLLGVK 233


>AT1G74750.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:28086800-28089367 FORWARD
           LENGTH=855
          Length = 855

 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 2/132 (1%)

Query: 162 DPDEVDRVCKVIDELFALDRNMEAVLDECGVKLSHDLVVDVLQRFKHARKPAFRFFCWAG 221
           +P  V      I   F      E  L   G ++       VL++  +    A  FF W  
Sbjct: 292 NPGYVVENVSSILRRFKWGHAAEEALHNFGFRMDAYQANQVLKQMDNYAN-ALGFFYWLK 350

Query: 222 QRPGFAHDSRTYNSMMGILGKTRQFETMVAMLEEMGEKGLL-TMETFSIAIKAFALAKER 280
           ++PGF HD  TY +M+G LG+ +QF  +  +L+EM   G      T++  I ++  A   
Sbjct: 351 RQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYL 410

Query: 281 KKAVGIFDLMKK 292
           K+A+ +F+ M++
Sbjct: 411 KEAMNVFNQMQE 422


>AT1G18900.3 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:6529778-6532541 FORWARD
           LENGTH=886
          Length = 886

 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 2/110 (1%)

Query: 184 EAVLDECGVKLSHDLVVDVLQRFKHARKPAFRFFCWAGQRPGFAHDSRTYNSMMGILGKT 243
           E  L   G+++       VL++       A  FF W  ++PGF HD  TY +M+G LG+ 
Sbjct: 319 EEALQNLGLRIDAYQANQVLKQMNDYGN-ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRA 377

Query: 244 RQFETMVAMLEEMGEKGLL-TMETFSIAIKAFALAKERKKAVGIFDLMKK 292
           +QF  +  +L+EM   G      T++  I ++  A    +A+ +F+ M++
Sbjct: 378 KQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQE 427


>AT1G18900.2 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:6529778-6532360 FORWARD
           LENGTH=860
          Length = 860

 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 2/110 (1%)

Query: 184 EAVLDECGVKLSHDLVVDVLQRFKHARKPAFRFFCWAGQRPGFAHDSRTYNSMMGILGKT 243
           E  L   G+++       VL++       A  FF W  ++PGF HD  TY +M+G LG+ 
Sbjct: 319 EEALQNLGLRIDAYQANQVLKQMNDYGN-ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRA 377

Query: 244 RQFETMVAMLEEMGEKGLL-TMETFSIAIKAFALAKERKKAVGIFDLMKK 292
           +QF  +  +L+EM   G      T++  I ++  A    +A+ +F+ M++
Sbjct: 378 KQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQE 427


>AT1G18900.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:6529778-6532360 FORWARD
           LENGTH=860
          Length = 860

 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 2/110 (1%)

Query: 184 EAVLDECGVKLSHDLVVDVLQRFKHARKPAFRFFCWAGQRPGFAHDSRTYNSMMGILGKT 243
           E  L   G+++       VL++       A  FF W  ++PGF HD  TY +M+G LG+ 
Sbjct: 319 EEALQNLGLRIDAYQANQVLKQMNDYGN-ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRA 377

Query: 244 RQFETMVAMLEEMGEKGLL-TMETFSIAIKAFALAKERKKAVGIFDLMKK 292
           +QF  +  +L+EM   G      T++  I ++  A    +A+ +F+ M++
Sbjct: 378 KQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQE 427


>AT5G66631.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:26596207-26598192 FORWARD
           LENGTH=661
          Length = 661

 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 58/105 (55%), Gaps = 2/105 (1%)

Query: 185 AVLDECGVKLSHDLVVDVLQRFKHARKPAFRFFCWAGQRPGFAHDSRTYNSMMGILGKTR 244
             L+E     ++ LV  +L+ F+ A + A+ FFCW   +PGF HD+ T   MM +L +  
Sbjct: 367 TALEEANFVWTNLLVCKMLRNFR-APETAWSFFCWVAIQPGFTHDAYTIERMMAMLARNG 425

Query: 245 QFETMVAMLEEMGEKGL-LTMETFSIAIKAFALAKERKKAVGIFD 288
           Q E +  ++ ++  +G+ L   T  + I  + ++K+ + A+ +F+
Sbjct: 426 QVELVDKLISKVRIEGIKLPFSTIRLIIDLYGISKKPEAAIKVFN 470


>AT5G43820.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:17618948-17620588 FORWARD
           LENGTH=546
          Length = 546

 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 65/125 (52%), Gaps = 1/125 (0%)

Query: 183 MEAVLDECGVKLSHDLVVDVLQRFKHARKPAFRFFCWAGQRPGFAHDSRTYNSMMGILGK 242
           ++  L   G+ LS D+V DVL R   + +    FF WA + PG   D  +Y+ ++  LG+
Sbjct: 104 IQKSLSSLGIGLSIDIVADVLNRGNLSGEAMVTFFDWAVREPGVTKDVGSYSVILRALGR 163

Query: 243 TRQFETMVAMLEEMGEKGLL-TMETFSIAIKAFALAKERKKAVGIFDLMKKHKFKVGVDA 301
            + F  M+ +L+ M  +G+   +E  +IA+ +F      ++A+ +F+  +    K   ++
Sbjct: 164 RKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHYVRRAIELFEESESFGVKCSTES 223

Query: 302 VNFLL 306
            N LL
Sbjct: 224 FNALL 228


>AT5G14080.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:4543265-4545256 REVERSE
           LENGTH=634
          Length = 634

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 1/100 (1%)

Query: 213 AFRFFCWAGQRPGFAHDSRTYNSMMGILGKTRQFETMVAMLEEM-GEKGLLTMETFSIAI 271
           A  FF WA Q+PG++HDS +Y+S+   L  +RQF  M A+ +++   K LL    +   I
Sbjct: 65  ALGFFNWAAQQPGYSHDSISYHSIFKSLSLSRQFSAMDALFKQVKSNKILLDSSVYRSLI 124

Query: 272 KAFALAKERKKAVGIFDLMKKHKFKVGVDAVNFLLGSLVA 311
               L ++ + A  + +       ++  D  N LL  L +
Sbjct: 125 DTLVLGRKAQSAFWVLEEAFSTGQEIHPDVCNRLLAGLTS 164


>AT2G01390.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:172256-174137 FORWARD
           LENGTH=577
          Length = 577

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 202 VLQRFKHARKP---AFRFFCWAGQRPGFAHDSRTYNSMMGILGKTRQFETMVAMLEEMGE 258
           ++ R   A  P   A+ FF WA Q  GF HD  TY +M+ I G+  + ++M ++   M E
Sbjct: 91  IINRVLKAHPPMQKAWLFFNWAAQIKGFKHDHFTYTTMLDIFGEAGRIQSMYSVFHLMKE 150

Query: 259 KGLL 262
           KG+L
Sbjct: 151 KGVL 154


>AT2G17525.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:7624178-7626058 FORWARD
           LENGTH=626
          Length = 626

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 3/124 (2%)

Query: 195 SHDLVVDVLQRFKHARKPAFRFFCWAGQRPGFAHDSRTYNSMMGILGKTRQFETMVAMLE 254
           S D +V ++   K A   A   F WA   PGF H   TY ++   L   R+F+T+  +L+
Sbjct: 42  SDDHIVRLILDQKSA-SGALETFRWASTFPGFIHSRSTYRALFHKLCVFRRFDTVYQLLD 100

Query: 255 EMGEKGLLTME--TFSIAIKAFALAKERKKAVGIFDLMKKHKFKVGVDAVNFLLGSLVAA 312
           EM +   L  +   F   I+ F  A+  K+ + + DL+ K   K  +   N +L  LV  
Sbjct: 101 EMPDSIGLPPDDAIFVTIIRGFGRARLIKRVISVVDLVSKFGIKPSLKVFNSILDVLVKE 160

Query: 313 KLGL 316
            + +
Sbjct: 161 DIDI 164


>AT5G11310.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:3606490-3608409 FORWARD
           LENGTH=602
          Length = 602

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 63/117 (53%), Gaps = 4/117 (3%)

Query: 182 NMEAVLDECGVKLSHDLVVDVLQRFKHARKPAFRFFCWAGQRPGFAHDSRTYNSMMGILG 241
           ++E+ LDE G++ S +LV  +  R   +       F WA  +PGF      ++S++  L 
Sbjct: 87  SLESALDETGIEPSVELVHALFDRLSSSPMLLHSVFKWAEMKPGFTLSPSLFDSVVNSLC 146

Query: 242 KTRQFETMVAMLEE--MGEKG--LLTMETFSIAIKAFALAKERKKAVGIFDLMKKHK 294
           K R+FE   +++ +    ++G  L++ +TF + I+ +A A   ++A+  F+  + ++
Sbjct: 147 KAREFEIAWSLVFDRVRSDEGSNLVSADTFIVLIRRYARAGMVQQAIRAFEFARSYE 203


>AT3G06920.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:2181717-2184449 FORWARD
           LENGTH=871
          Length = 871

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 3/149 (2%)

Query: 166 VDRVCKVIDELFALDRNMEAVLDECGVKLSHDLVVDVLQRFKHARKPAFRFFCWAGQRPG 225
           V+ +C V+ E      + E  L     K   + V+ VL+R K   + A  +F W  +R  
Sbjct: 36  VNDICNVL-ETGPWGPSAENTLSALSFKPQPEFVIGVLRRLKDVNR-AIEYFRWYERRTE 93

Query: 226 FAHDSRTYNSMMGILGKTRQFETMVAMLEEMGEKGL-LTMETFSIAIKAFALAKERKKAV 284
             H   +YNS++ ++ + R F+ +  +L EM   G   ++ T    +     A + ++  
Sbjct: 94  LPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGY 153

Query: 285 GIFDLMKKHKFKVGVDAVNFLLGSLVAAK 313
            +  +M+K KF+    A   L+G+  A  
Sbjct: 154 DVVQMMRKFKFRPAFSAYTTLIGAFSAVN 182


>AT1G55630.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:20791817-20793250 REVERSE
           LENGTH=477
          Length = 477

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 10/142 (7%)

Query: 182 NMEAVLDECGVKLSHDLVVDVL---------QRFKHARKPAFRFFCWAGQRPGFAHDSRT 232
           N ++ LDE  V +S  LV +VL                K A++FF W G +  F H +  
Sbjct: 95  NTKSALDELNVSISGLLVREVLVGILRTLSFDNKTRCAKLAYKFFVWCGGQENFRHTANC 154

Query: 233 YNSMMGILGKTRQFETMVAMLEEMGEKGLLTME-TFSIAIKAFALAKERKKAVGIFDLMK 291
           Y+ +M I  +  +++ M  +++EM + G  T   TF++ I     A   +  V  F   K
Sbjct: 155 YHLLMKIFAECGEYKAMCRLIDEMIKDGYPTTACTFNLLICTCGEAGLARDVVEQFIKSK 214

Query: 292 KHKFKVGVDAVNFLLGSLVAAK 313
              ++    + N +L SL+  K
Sbjct: 215 TFNYRPYKHSYNAILHSLLGVK 236


>AT1G03560.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:890428-892410 REVERSE
           LENGTH=660
          Length = 660

 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 77/150 (51%), Gaps = 3/150 (2%)

Query: 166 VDRVCKVIDELFALDRNMEAVLDECGVKLSHDLVVDVLQRFKHARKP--AFRFFCWAGQR 223
           V ++  ++D   +++ N++    +  +KLS + V  VL+  +   KP  A+ FFCW+ ++
Sbjct: 86  VSQILNLLDGSASMESNLDGFCRKFLIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQ 145

Query: 224 PGFAHDSRTYNSMMGILGKTRQFETMVAMLEEMGEKGL-LTMETFSIAIKAFALAKERKK 282
             + H+   Y S++ +L   +  + +  +  E+ +    +T+   +  IK+F      ++
Sbjct: 146 KKYTHNLECYVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEE 205

Query: 283 AVGIFDLMKKHKFKVGVDAVNFLLGSLVAA 312
            + ++  MK++  +  +   NFL+  LV+A
Sbjct: 206 LLWVWRKMKENGIEPTLYTYNFLMNGLVSA 235