Miyakogusa Predicted Gene

Lj6g3v1969170.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1969170.1 tr|B9HZG3|B9HZG3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_568149 PE=4
SV=1,54.84,2e-18,seg,NULL; UBN2,NULL,gene.g67154.t1.1
         (375 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18670.1 | Symbols:  | Ankyrin repeat family protein | chr3:6...    60   2e-09
AT5G04680.1 | Symbols:  | Ankyrin repeat family protein | chr5:1...    55   5e-08
AT3G54070.1 | Symbols:  | Ankyrin repeat family protein | chr3:2...    50   2e-06
AT5G04700.1 | Symbols:  | Ankyrin repeat family protein | chr5:1...    50   3e-06
AT5G48050.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Retrotrans...    49   5e-06

>AT3G18670.1 | Symbols:  | Ankyrin repeat family protein |
           chr3:6424135-6426471 REVERSE LENGTH=598
          Length = 598

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 9/97 (9%)

Query: 15  MFLSILISPCEMWDFRKSLPRKLMTGFALLFFSMATTMLSFSATVLINIKLEKNNWTSIV 74
           MFL IL S     DF +SLP KL+ G   LF SMAT +++F  T L+ +  EK +W S  
Sbjct: 498 MFLGILKSRYREEDFLRSLPTKLIVGLLALFLSMATMIVTFVVT-LMTLVGEKISWVSAQ 556

Query: 75  TYCAAFLPISIFAMMQFPL--------YNPHISTKHR 103
               A +P+ +F ++QFP+        Y P++  K R
Sbjct: 557 FMFLAVIPLGMFVVLQFPVLLEIFRATYCPNVFDKPR 593


>AT5G04680.1 | Symbols:  | Ankyrin repeat family protein |
           chr5:1346314-1348850 REVERSE LENGTH=693
          Length = 693

 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query: 15  MFLSILISPCEMWDFRKSLPRKLMTGFALLFFSMATTMLSFSATVLINIKLEKNNWTSIV 74
           +FL IL +     DF  +LP K++TG ++LF S+A  +++FS  VLI + + K  W    
Sbjct: 595 IFLGILTARYSFDDFLVALPTKMITGLSILFVSIAAMLIAFS-LVLITM-MNKGKWIVAP 652

Query: 75  TYCAAFLPISIFAMMQFPLYNPHI-STKHRTDADRD 109
           T   A LP  +F ++Q+PL    I ST  +   DR+
Sbjct: 653 TILCACLPALLFVLLQYPLLKEMIFSTYGKGIFDRN 688


>AT3G54070.1 | Symbols:  | Ankyrin repeat family protein |
           chr3:20021330-20023603 REVERSE LENGTH=574
          Length = 574

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query: 15  MFLSILISPCEMWDFRKSLPRKLMTGFALLFFSMATTMLSFSATVLINIKLEKNNWTSIV 74
           +FLSI  S     DFR  LP KLM G + LF S+ + +L+F+ ++++ I++EK + + ++
Sbjct: 471 IFLSIFTSRYAEEDFRYDLPTKLMFGLSALFISIISMILAFTFSMIL-IRVEKASLSLVL 529

Query: 75  TYCAAFLPISIFAMMQFPLY 94
             C A L    FA + F L+
Sbjct: 530 ISCLASLTALTFAYLYFHLW 549


>AT5G04700.1 | Symbols:  | Ankyrin repeat family protein |
           chr5:1354240-1356754 REVERSE LENGTH=669
          Length = 669

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 15  MFLSILISPCEMWDFRKSLPRKLMTGFALLFFSMATTMLSFSATVLINIKLEKNNWTSIV 74
           +FL IL +     DF   LP K++ G ++LF S+A  +++FS+  L  +  ++  W    
Sbjct: 570 IFLGILTARYSFDDFLVFLPTKMIAGLSILFVSIAAMLIAFSSA-LFTMMGKEGKWIVAP 628

Query: 75  TYCAAFLPISIFAMMQFPLYNPHI-STKHRTDADRD 109
           T   A LP  +F ++Q+PL    I ST  +   DR+
Sbjct: 629 TILFACLPALLFVLLQYPLLKEMIFSTYGKGIFDRN 664


>AT5G48050.1 | Symbols:  | CONTAINS InterPro DOMAIN/s:
           Retrotransposon gag protein (InterPro:IPR005162); BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins
           in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
           Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
           - 339 (source: NCBI BLink). | chr5:19472661-19473770
           REVERSE LENGTH=369
          Length = 369

 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 18/134 (13%)

Query: 120 WEQQDVFFLPWNQSTVMSPILTRMIRCH-HPYQIWEKIHSHFDSKTEAKSRQLRTELRNS 178
           W+++D     W   T+   +L  +I+       +W  + + F    EA++ Q   ELR +
Sbjct: 67  WKERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTT 126

Query: 179 CLSNRSIGDHLLCIKSISDSQSTIRDPVSSKETVDVILEGFSSDY--------------- 223
            + + S+ ++   +KS+SD  + +  P+S +  V  +L G +  Y               
Sbjct: 127 TIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPS 186

Query: 224 --EALSLLLAQEAR 235
             EA S+LL +E+R
Sbjct: 187 FTEARSMLLMEESR 200