Miyakogusa Predicted Gene

Lj6g3v1966950.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1966950.1 tr|G7ILL5|G7ILL5_MEDTR 26S proteasome non-ATPase
regulatory subunit OS=Medicago truncatula GN=MTR_2g,99.03,0,26S
PROTEASOME NON-ATPASE REGULATORY SUBUNIT 14,NULL; EUKARYOTIC
TRANSLATION INITIATION FACTOR 3 -RE,CUFF.60417.1
         (309 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23540.1 | Symbols:  | Mov34/MPN/PAD-1 family protein | chr5:...   565   e-161
AT5G23540.2 | Symbols:  | Mov34/MPN/PAD-1 family protein | chr5:...   489   e-138
AT1G71230.1 | Symbols: CSN5B, CSN5, AJH2 | COP9-signalosome 5B |...   125   4e-29
AT1G22920.1 | Symbols: CSN5A, JAB1, AJH1 | COP9 signalosome 5A |...   121   5e-28
AT1G22920.2 | Symbols: CSN5A, JAB1, AJH1 | COP9 signalosome 5A |...   121   6e-28
AT1G10600.1 | Symbols: AMSH2 | associated molecule with the SH3 ...    55   8e-08
AT1G10840.1 | Symbols: TIF3H1 | translation initiation factor 3 ...    54   1e-07
AT1G10600.3 | Symbols: AMSH2 | associated molecule with the SH3 ...    52   4e-07
AT1G10600.2 | Symbols: AMSH2 | associated molecule with the SH3 ...    52   4e-07

>AT5G23540.1 | Symbols:  | Mov34/MPN/PAD-1 family protein |
           chr5:7937772-7939339 FORWARD LENGTH=308
          Length = 308

 Score =  565 bits (1456), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 277/309 (89%), Positives = 280/309 (90%), Gaps = 1/309 (0%)

Query: 1   MERLQRMFXXXXXXLGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGE 60
           MERLQR+F      LGH  PDSPTLD+SEQVYISSLALLKMLKHGRAGVPMEVMGLMLGE
Sbjct: 1   MERLQRIFGAGGG-LGHASPDSPTLDTSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGE 59

Query: 61  FVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGC 120
           FVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGC
Sbjct: 60  FVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGC 119

Query: 121 WLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSN 180
           WLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFR INPQT+MLGQEPRQTTSN
Sbjct: 120 WLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRSINPQTIMLGQEPRQTTSN 179

Query: 181 LGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDTHSKT 240
           LGHLNKPSIQALIHGLNRHYYSIAINYR                WTDGLTL RFDTHSKT
Sbjct: 180 LGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLRRFDTHSKT 239

Query: 241 NEQTVQEMLSLAVKYNKAVQEEDELSPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTL 300
           NEQTVQEMLSLA KYNKAVQEEDELSPEKLAI NVGRQDAKKHLEEHVSNLMSSNIVQTL
Sbjct: 240 NEQTVQEMLSLAAKYNKAVQEEDELSPEKLAIVNVGRQDAKKHLEEHVSNLMSSNIVQTL 299

Query: 301 GMMLDTVVF 309
           G MLDTVVF
Sbjct: 300 GTMLDTVVF 308


>AT5G23540.2 | Symbols:  | Mov34/MPN/PAD-1 family protein |
           chr5:7938109-7939339 FORWARD LENGTH=259
          Length = 259

 Score =  489 bits (1258), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 237/259 (91%), Positives = 238/259 (91%)

Query: 51  MEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVG 110
           MEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVG
Sbjct: 1   MEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVG 60

Query: 111 WYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMML 170
           WYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFR INPQT+ML
Sbjct: 61  WYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRSINPQTIML 120

Query: 171 GQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLT 230
           GQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYR                WTDGLT
Sbjct: 121 GQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLT 180

Query: 231 LHRFDTHSKTNEQTVQEMLSLAVKYNKAVQEEDELSPEKLAIANVGRQDAKKHLEEHVSN 290
           L RFDTHSKTNEQTVQEMLSLA KYNKAVQEEDELSPEKLAI NVGRQDAKKHLEEHVSN
Sbjct: 181 LRRFDTHSKTNEQTVQEMLSLAAKYNKAVQEEDELSPEKLAIVNVGRQDAKKHLEEHVSN 240

Query: 291 LMSSNIVQTLGMMLDTVVF 309
           LMSSNIVQTLG MLDTVVF
Sbjct: 241 LMSSNIVQTLGTMLDTVVF 259


>AT1G71230.1 | Symbols: CSN5B, CSN5, AJH2 | COP9-signalosome 5B |
           chr1:26852560-26854255 FORWARD LENGTH=358
          Length = 358

 Score =  125 bits (314), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 69/141 (48%), Positives = 92/141 (65%), Gaps = 14/141 (9%)

Query: 29  EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVD 88
           ++V IS+LALLKM+ H R+G  +E+MGLM G+  D  T+ V+D FA+P  GT   V A D
Sbjct: 57  KRVKISALALLKMVVHARSGGTIEIMGLMQGK-TDGDTIIVMDAFALPVEGTETRVNAQD 115

Query: 89  HVF-------QTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAV 141
             +       QTN L      GR E VVGWYHSHPG+GCWLSG+D++TQ+  +   +  +
Sbjct: 116 DAYEYMVEYSQTNKL-----AGRLENVVGWYHSHPGYGCWLSGIDVSTQRLNQQHQEPFL 170

Query: 142 AVVVDPIQSVK-GKVVIDAFR 161
           AVV+DP ++V  GKV I AFR
Sbjct: 171 AVVIDPTRTVSAGKVEIGAFR 191


>AT1G22920.1 | Symbols: CSN5A, JAB1, AJH1 | COP9 signalosome 5A |
           chr1:8109882-8111895 REVERSE LENGTH=357
          Length = 357

 Score =  121 bits (304), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 64/136 (47%), Positives = 89/136 (65%), Gaps = 4/136 (2%)

Query: 29  EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVD 88
           ++V+IS+LALLKM+ H R+G  +E+MGLM G+   + T+ V+D FA+P  GT   V A  
Sbjct: 57  KRVHISALALLKMVVHARSGGTIEIMGLMQGKTEGD-TIIVMDAFALPVEGTETRVNAQS 115

Query: 89  HVFQ--TNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVD 146
             ++         K  GR E VVGWYHSHPG+GCWLSG+D++TQ   +   +  +AVV+D
Sbjct: 116 DAYEYMVEYSQTSKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVID 175

Query: 147 PIQSVK-GKVVIDAFR 161
           P ++V  GKV I AFR
Sbjct: 176 PTRTVSAGKVEIGAFR 191


>AT1G22920.2 | Symbols: CSN5A, JAB1, AJH1 | COP9 signalosome 5A |
           chr1:8109998-8111895 REVERSE LENGTH=351
          Length = 351

 Score =  121 bits (304), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 64/136 (47%), Positives = 89/136 (65%), Gaps = 4/136 (2%)

Query: 29  EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVD 88
           ++V+IS+LALLKM+ H R+G  +E+MGLM G+   + T+ V+D FA+P  GT   V A  
Sbjct: 57  KRVHISALALLKMVVHARSGGTIEIMGLMQGKTEGD-TIIVMDAFALPVEGTETRVNAQS 115

Query: 89  HVFQ--TNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVD 146
             ++         K  GR E VVGWYHSHPG+GCWLSG+D++TQ   +   +  +AVV+D
Sbjct: 116 DAYEYMVEYSQTSKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVID 175

Query: 147 PIQSVK-GKVVIDAFR 161
           P ++V  GKV I AFR
Sbjct: 176 PTRTVSAGKVEIGAFR 191


>AT1G10600.1 | Symbols: AMSH2 | associated molecule with the SH3
           domain of STAM 2 | chr1:3503765-3505190 FORWARD
           LENGTH=223
          Length = 223

 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 9/118 (7%)

Query: 51  MEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVG 110
           +E  G  L  F++     V  +    Q  T  S +A++ V   ++     Q  R    VG
Sbjct: 71  LETCG-TLAAFLERGIFYVTTLIIPKQESTSNSCQAMNEVEVFSI-----QNERELYPVG 124

Query: 111 WYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTM 168
           W H+HP  GC++S VD++T  S++ +   A A+VV P  S K   +   F+L +P  M
Sbjct: 125 WIHTHPSQGCFMSSVDLHTHYSYQVMVPEAFAIVVAPTDSSKSYGI---FKLTDPGGM 179


>AT1G10840.1 | Symbols: TIF3H1 | translation initiation factor 3
           subunit H1 | chr1:3607885-3610299 REVERSE LENGTH=337
          Length = 337

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 2/132 (1%)

Query: 31  VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHV 90
           V I  LA+LK++KH +   P  V G +LG  V    + V + F  P       +EA    
Sbjct: 25  VQIEGLAVLKIIKHCKEFSPTLVTGQLLGLDVGS-VLEVTNCFPFPVRDDDEEIEADGAN 83

Query: 91  FQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQS 150
           +Q  M+  L++       VGWY S    G + +   I T  +++   +R V ++ DP ++
Sbjct: 84  YQLEMMRCLREVNVDNNTVGWYQSTV-LGSYQTVELIETFMNYQENIKRCVCIIYDPSKA 142

Query: 151 VKGKVVIDAFRL 162
             G + + A +L
Sbjct: 143 DLGVLALKALKL 154


>AT1G10600.3 | Symbols: AMSH2 | associated molecule with the SH3
           domain of STAM 2 | chr1:3503765-3505190 FORWARD
           LENGTH=222
          Length = 222

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 10/118 (8%)

Query: 51  MEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVG 110
           +E  G  L  F++     V  +    Q  T  S +A++ V   ++     Q  R    VG
Sbjct: 71  LETCG-TLAAFLERGIFYVTTLIIPKQESTSNSCQAMNEVEVFSI-----QNERELYPVG 124

Query: 111 WYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTM 168
           W H+HP  GC++S VD++T  S++ +   A A+VV P  S    +    F+L +P  M
Sbjct: 125 WIHTHPSQGCFMSSVDLHTHYSYQVMVPEAFAIVVAPTDSSNYGI----FKLTDPGGM 178


>AT1G10600.2 | Symbols: AMSH2 | associated molecule with the SH3
           domain of STAM 2 | chr1:3503907-3505190 FORWARD
           LENGTH=166
          Length = 166

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 101 QTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAF 160
           Q  R    VGW H+HP  GC++S VD++T  S++ +   A A+VV P  S K   +   F
Sbjct: 58  QNERELYPVGWIHTHPSQGCFMSSVDLHTHYSYQVMVPEAFAIVVAPTDSSKSYGI---F 114

Query: 161 RLINPQTM 168
           +L +P  M
Sbjct: 115 KLTDPGGM 122