Miyakogusa Predicted Gene

Lj6g3v1966780.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1966780.1 tr|Q533S1|Q533S1_LOTJA MADS box protein AGa
(Fragment) OS=Lotus japonicus PE=2 SV=1,97.67,0,K_BOX,Transcription
factor, K-box; coiled-coil,NULL; seg,NULL; K-box,Transcription factor,
K-box; MA,CUFF.60326.1
         (129 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G18960.1 | Symbols: AG | K-box region and MADS-box transcript...   133   3e-32
AT4G18960.2 | Symbols: AG | K-box region and MADS-box transcript...   133   3e-32
AT3G58780.2 | Symbols: SHP1, AGL1 | K-box region and MADS-box tr...    90   4e-19
AT3G58780.1 | Symbols: SHP1, AGL1 | K-box region and MADS-box tr...    90   4e-19
AT3G58780.3 | Symbols: SHP1 | K-box region and MADS-box transcri...    90   4e-19
AT2G42830.1 | Symbols: SHP2, AGL5 | K-box region and MADS-box tr...    76   5e-15
AT2G42830.2 | Symbols: SHP2, AGL5 | K-box region and MADS-box tr...    71   2e-13
AT4G09960.1 | Symbols: STK, AGL11 | K-box region and MADS-box tr...    64   2e-11
AT4G09960.3 | Symbols: STK, AGL11 | K-box region and MADS-box tr...    64   2e-11
AT4G09960.4 | Symbols: STK | K-box region and MADS-box transcrip...    59   1e-09

>AT4G18960.1 | Symbols: AG | K-box region and MADS-box transcription
           factor family protein  | chr4:10383917-10388272 FORWARD
           LENGTH=252
          Length = 252

 Score =  133 bits (335), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/125 (53%), Positives = 86/125 (68%), Gaps = 3/125 (2%)

Query: 1   MMGESLGSMNAXXXXXXXXXXXXGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAK 60
           +MGE++GSM+              I+RIRSKKNELLF+EI+YMQKRE+DLHN+NQ+LRAK
Sbjct: 127 LMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLHNDNQILRAK 186

Query: 61  IAESERNHPNLSILAGSTSNYESMXXXXXXXXXXFDSRGYFQVTGLQPTTH--TQYSRQD 118
           IAE+ERN+P++S++ G  SNYE +          FDSR YFQV  LQP  H  +   RQD
Sbjct: 187 IAENERNNPSISLMPGG-SNYEQLMPPPQTQSQPFDSRNYFQVAALQPNNHHYSSAGRQD 245

Query: 119 QISLQ 123
           Q +LQ
Sbjct: 246 QTALQ 250


>AT4G18960.2 | Symbols: AG | K-box region and MADS-box transcription
           factor family protein  | chr4:10384041-10388272 FORWARD
           LENGTH=238
          Length = 238

 Score =  133 bits (334), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/125 (53%), Positives = 86/125 (68%), Gaps = 3/125 (2%)

Query: 1   MMGESLGSMNAXXXXXXXXXXXXGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAK 60
           +MGE++GSM+              I+RIRSKKNELLF+EI+YMQKRE+DLHN+NQ+LRAK
Sbjct: 113 LMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLHNDNQILRAK 172

Query: 61  IAESERNHPNLSILAGSTSNYESMXXXXXXXXXXFDSRGYFQVTGLQPTTH--TQYSRQD 118
           IAE+ERN+P++S++ G  SNYE +          FDSR YFQV  LQP  H  +   RQD
Sbjct: 173 IAENERNNPSISLMPGG-SNYEQLMPPPQTQSQPFDSRNYFQVAALQPNNHHYSSAGRQD 231

Query: 119 QISLQ 123
           Q +LQ
Sbjct: 232 QTALQ 236


>AT3G58780.2 | Symbols: SHP1, AGL1 | K-box region and MADS-box
           transcription factor family protein  |
           chr3:21739150-21741766 FORWARD LENGTH=241
          Length = 241

 Score = 89.7 bits (221), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/126 (46%), Positives = 75/126 (59%), Gaps = 8/126 (6%)

Query: 1   MMGESLGSMNAXXXXXXXXXXXXGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAK 60
           ++GESLGS+N             GISR+RSKKNELL AEIEYMQKRE++L +NN  LRAK
Sbjct: 119 IVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHNNMYLRAK 178

Query: 61  IAESERNHPNL---SILAGSTSNYESMXXXXXXXXXXFDSRGYFQVTGLQPTTHTQYSRQ 117
           IAE  R +P+    S++ G+T  YES             +R Y  V  L+P  + Q+S Q
Sbjct: 179 IAEGARLNPDQQESSVIQGTTV-YESGVSSHDQSQHY--NRNYIPVNLLEP--NQQFSGQ 233

Query: 118 DQISLQ 123
           DQ  LQ
Sbjct: 234 DQPPLQ 239


>AT3G58780.1 | Symbols: SHP1, AGL1 | K-box region and MADS-box
           transcription factor family protein  |
           chr3:21739150-21741766 FORWARD LENGTH=248
          Length = 248

 Score = 89.7 bits (221), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/126 (46%), Positives = 75/126 (59%), Gaps = 8/126 (6%)

Query: 1   MMGESLGSMNAXXXXXXXXXXXXGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAK 60
           ++GESLGS+N             GISR+RSKKNELL AEIEYMQKRE++L +NN  LRAK
Sbjct: 126 IVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHNNMYLRAK 185

Query: 61  IAESERNHPNL---SILAGSTSNYESMXXXXXXXXXXFDSRGYFQVTGLQPTTHTQYSRQ 117
           IAE  R +P+    S++ G+T  YES             +R Y  V  L+P  + Q+S Q
Sbjct: 186 IAEGARLNPDQQESSVIQGTTV-YESGVSSHDQSQHY--NRNYIPVNLLEP--NQQFSGQ 240

Query: 118 DQISLQ 123
           DQ  LQ
Sbjct: 241 DQPPLQ 246


>AT3G58780.3 | Symbols: SHP1 | K-box region and MADS-box
           transcription factor family protein  |
           chr3:21739150-21741766 FORWARD LENGTH=273
          Length = 273

 Score = 89.7 bits (221), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/126 (46%), Positives = 75/126 (59%), Gaps = 8/126 (6%)

Query: 1   MMGESLGSMNAXXXXXXXXXXXXGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAK 60
           ++GESLGS+N             GISR+RSKKNELL AEIEYMQKRE++L +NN  LRAK
Sbjct: 151 IVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHNNMYLRAK 210

Query: 61  IAESERNHPNL---SILAGSTSNYESMXXXXXXXXXXFDSRGYFQVTGLQPTTHTQYSRQ 117
           IAE  R +P+    S++ G+T  YES             +R Y  V  L+P  + Q+S Q
Sbjct: 211 IAEGARLNPDQQESSVIQGTTV-YESGVSSHDQSQHY--NRNYIPVNLLEP--NQQFSGQ 265

Query: 118 DQISLQ 123
           DQ  LQ
Sbjct: 266 DQPPLQ 271


>AT2G42830.1 | Symbols: SHP2, AGL5 | K-box region and MADS-box
           transcription factor family protein  |
           chr2:17820602-17823806 FORWARD LENGTH=246
          Length = 246

 Score = 76.3 bits (186), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/131 (40%), Positives = 70/131 (53%), Gaps = 20/131 (15%)

Query: 1   MMGESLGSMNAXXXXXXXXXXXXGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAK 60
           ++GESLGS+N             GISR+RSKK+E+L AEIEYMQKREI+L N+N  LR+K
Sbjct: 126 ILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLRSK 185

Query: 61  IA--------ESERNHPNLSILAGSTSNYESMXXXXXXXXXXFDSRGYFQVTGLQPTTHT 112
           I         ES   H      +G TS+++S             +R Y  V  L+P  ++
Sbjct: 186 ITERTGLQQQESSVIHQGTVYESGVTSSHQSGQY----------NRNYIAVNLLEPNQNS 235

Query: 113 QYSRQDQISLQ 123
             S QDQ  LQ
Sbjct: 236 --SNQDQPPLQ 244


>AT2G42830.2 | Symbols: SHP2, AGL5 | K-box region and MADS-box
           transcription factor family protein  |
           chr2:17820602-17823806 FORWARD LENGTH=248
          Length = 248

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 70/133 (52%), Gaps = 22/133 (16%)

Query: 1   MMGESLGSMNAXXXXXXXXXXXXGISRIRSKKNELLFAEIEYMQKR--EIDLHNNNQLLR 58
           ++GESLGS+N             GISR+RSKK+E+L AEIEYMQKR  EI+L N+N  LR
Sbjct: 126 ILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKRVKEIELQNDNMYLR 185

Query: 59  AKIA--------ESERNHPNLSILAGSTSNYESMXXXXXXXXXXFDSRGYFQVTGLQPTT 110
           +KI         ES   H      +G TS+++S             +R Y  V  L+P  
Sbjct: 186 SKITERTGLQQQESSVIHQGTVYESGVTSSHQSGQY----------NRNYIAVNLLEPNQ 235

Query: 111 HTQYSRQDQISLQ 123
           ++  S QDQ  LQ
Sbjct: 236 NS--SNQDQPPLQ 246


>AT4G09960.1 | Symbols: STK, AGL11 | K-box region and MADS-box
           transcription factor family protein  |
           chr4:6236713-6239409 REVERSE LENGTH=230
          Length = 230

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 41/66 (62%)

Query: 1   MMGESLGSMNAXXXXXXXXXXXXGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAK 60
           +MG+SL S++              ISRIRSKK+ELL  EIE  QKREI+L N N  LR K
Sbjct: 111 LMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTK 170

Query: 61  IAESER 66
           +AE ER
Sbjct: 171 VAEVER 176


>AT4G09960.3 | Symbols: STK, AGL11 | K-box region and MADS-box
           transcription factor family protein  |
           chr4:6236713-6240494 REVERSE LENGTH=256
          Length = 256

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 41/66 (62%)

Query: 1   MMGESLGSMNAXXXXXXXXXXXXGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAK 60
           +MG+SL S++              ISRIRSKK+ELL  EIE  QKREI+L N N  LR K
Sbjct: 137 LMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTK 196

Query: 61  IAESER 66
           +AE ER
Sbjct: 197 VAEVER 202


>AT4G09960.4 | Symbols: STK | K-box region and MADS-box
           transcription factor family protein  |
           chr4:6236713-6239409 REVERSE LENGTH=234
          Length = 234

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 1   MMGESLGSMNAXXXXXXXXXXXXGISRIRSKKNELLFAEIEYMQKR----EIDLHNNNQL 56
           +MG+SL S++              ISRIRSKK+ELL  EIE  QKR    EI+L N N  
Sbjct: 111 LMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKRLILQEIELDNENIY 170

Query: 57  LRAKIAESER 66
           LR K+AE ER
Sbjct: 171 LRTKVAEVER 180