Miyakogusa Predicted Gene

Lj6g3v1966510.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1966510.2 Non Chatacterized Hit- tr|J3L1H7|J3L1H7_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB01G3,34.48,2e-18,zf-MYND,Zinc finger, MYND-type;
PDCD2_C,Programmed cell death protein 2, C-terminal; ZF_MYND_1,Zinc
,CUFF.60332.2
         (208 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02220.1 | Symbols:  | zinc finger (MYND type) family protein...   243   9e-65

>AT4G02220.1 | Symbols:  | zinc finger (MYND type) family protein /
           programmed cell death 2 C-terminal domain-containing
           protein | chr4:976728-978902 FORWARD LENGTH=418
          Length = 418

 Score =  243 bits (619), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 116/209 (55%), Positives = 144/209 (68%), Gaps = 6/209 (2%)

Query: 2   LFVFICPSMTCLLRDQHEQWKRHPERPSRSVKVFRCQLPCVNPFYSSECPKDDGSHKPAT 61
           LF+F+CPSM+CLLRDQHEQWKR PE+  RS KVFRCQLP  NPFYSSE PK DG+ KP  
Sbjct: 123 LFLFMCPSMSCLLRDQHEQWKRAPEKAMRSTKVFRCQLPRANPFYSSEAPKHDGTDKPLG 182

Query: 62  SGAALCDWCGTWKGDKLCSSCRQVRYCCEKHQVMSWRSGHKIACQQIKVSS--SVSGPNK 119
            GA LC WCGTWKGDKLCS C+  RYC  KHQ + WR GHK  CQQ++  S  S SGP  
Sbjct: 183 HGAPLCTWCGTWKGDKLCSGCKNARYCSPKHQALHWRLGHKTECQQLRTVSETSDSGPVN 242

Query: 120 SVTTSLESRKVGSNNVWPEFEITIEDESEYNRDISDTLANSLRLSDSLISKNTADESMNL 179
           +     E +KV S ++W EF +  EDESEY+ ++S        ++  L+SK   D+ M  
Sbjct: 243 NGVAPTEKQKVASKSLWKEFVLINEDESEYDTEMS----GDDEVAKPLVSKREVDDQMKS 298

Query: 180 DLDSFQGDDEKKSWVSFQDRIAKAPEQVL 208
            ++ F+GD +KK+WV+FQ R+ KAPEQVL
Sbjct: 299 LMNDFEGDADKKNWVNFQQRVDKAPEQVL 327