Miyakogusa Predicted Gene

Lj6g3v1966490.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1966490.1 tr|A9REZ7|A9REZ7_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_113082,30,0.00000000000009,seg,NULL,CUFF.60330.1
         (209 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G45660.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   117   4e-27

>AT5G45660.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; Has 35333 Blast hits to 34131 proteins in 2444
           species: Archae - 798; Bacteria - 22429; Metazoa - 974;
           Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes
           - 9610 (source: NCBI BLink). | chr5:18525103-18526726
           FORWARD LENGTH=226
          Length = 226

 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 101/173 (58%), Gaps = 7/173 (4%)

Query: 30  SYLRYRNLFSLSHSLLTAVANLXXXXXXXXXXXXXXXXXXXXXKMSGIGFLRFLWSA--- 86
           S+ +Y+ L S+S SLL  VANL                     +  G+GF+   WS    
Sbjct: 39  SFTQYKTLISISRSLLLRVANLRASRGDALGSSRVRAMADEIDRGLGLGFISRAWSVGWD 98

Query: 87  --WSWSWK--DLSLTDLYGAVSDINELLRSLNEFTRLESPAQTSAWLSRNYQKLLKVTKS 142
             W+++W+   +   ++YGA+ D+NEL+  + EF R ES A  ++ ++R+Y K L+V+  
Sbjct: 99  YMWNYAWRKGGIDYGEMYGAIGDLNELMGLVTEFNRAESNADKASSVARSYGKALRVSNK 158

Query: 143 LSRKLLNSFGQSKVVREIVETLQKEVVEGGLIRDCLQVGTKDLKALVQVLKDL 195
           L R+LL  F +S  +RE  E +Q EVV+G L++DCL+VG  D+K+L+Q+ KD+
Sbjct: 159 LLRRLLRIFAKSGALREFWEMVQAEVVDGELLQDCLEVGGNDVKSLLQIAKDM 211