Miyakogusa Predicted Gene

Lj6g3v1954240.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1954240.1 Non Chatacterized Hit- tr|B9SZL2|B9SZL2_RICCO
Pentatricopeptide repeat-containing protein, putative
,62.07,3e-18,seg,NULL,NODE_78396_length_616_cov_11.641233.path2.1
         (168 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G30290.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    92   2e-19

>AT1G30290.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:10670320-10672740 REVERSE
           LENGTH=806
          Length = 806

 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 49/59 (83%)

Query: 110 DESEFRHPLVREVCRLITLKSAWNPKFEGNLRHLLRSLKPPLVCAVLRSQADERVALSF 168
           +E E RHPLVREV RLI L+S+WNPK EG +R+LLRSLKP  VCAVLRSQ DERVAL F
Sbjct: 135 EEDESRHPLVREVGRLIGLRSSWNPKHEGQMRNLLRSLKPSQVCAVLRSQDDERVALKF 193