Miyakogusa Predicted Gene

Lj6g3v1952790.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1952790.1 tr|G7ZUW7|G7ZUW7_MEDTR CCR4-associated factor
OS=Medicago truncatula GN=MTR_013s0010 PE=4 SV=1,71.74,0.0000000005,no
description,NULL; seg,NULL,CUFF.60292.1
         (127 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G44260.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    48   2e-06
AT5G22250.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    46   6e-06

>AT3G44260.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr3:15952213-15953055
           REVERSE LENGTH=280
          Length = 280

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 33/45 (73%), Gaps = 2/45 (4%)

Query: 83  LGRSHQVGSDSLLILHAFKKIMEVYFGNKDDGLVKYDGVLHGLEV 127
           +G+ HQ GSDSLL  HAF+++ ++YF    DG  K+ GVL+GLEV
Sbjct: 237 VGKCHQAGSDSLLTWHAFQRMRDLYFVQ--DGPEKHAGVLYGLEV 279


>AT5G22250.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr5:7365605-7366441
           REVERSE LENGTH=278
          Length = 278

 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 33/45 (73%), Gaps = 2/45 (4%)

Query: 83  LGRSHQVGSDSLLILHAFKKIMEVYFGNKDDGLVKYDGVLHGLEV 127
           +G+ HQ GSDSLL   AF+++ ++YF   +DG  K+ GVL+GLEV
Sbjct: 235 VGKCHQAGSDSLLTWQAFQRMRDLYF--VEDGAEKHAGVLYGLEV 277