Miyakogusa Predicted Gene

Lj6g3v1951740.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1951740.1 CUFF.60284.1
         (69 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G59540.1 | Symbols:  | Ribosomal L38e protein family | chr3:2...   133   2e-32
AT2G43460.1 | Symbols:  | Ribosomal L38e protein family | chr2:1...   133   2e-32

>AT3G59540.1 | Symbols:  | Ribosomal L38e protein family |
          chr3:21995897-21996742 REVERSE LENGTH=69
          Length = 69

 Score =  133 bits (335), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/69 (94%), Positives = 68/69 (98%)

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDPEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRS+D+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPGLSVQDL 69
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69


>AT2G43460.1 | Symbols:  | Ribosomal L38e protein family |
          chr2:18046285-18047292 REVERSE LENGTH=69
          Length = 69

 Score =  133 bits (335), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/69 (94%), Positives = 68/69 (98%)

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDPEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRS+D+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPGLSVQDL 69
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69