Miyakogusa Predicted Gene

Lj6g3v1946570.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1946570.1 Non Chatacterized Hit- tr|K3YJT9|K3YJT9_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si014508,48.11,2e-18,OS02G0684300 PROTEIN,NULL;
UNCHARACTERIZED,NULL; Ndc1_Nup,Nucleoporin protein
Ndc1-Nup,CUFF.60273.1
         (349 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G73240.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Nucleopori...   378   e-105

>AT1G73240.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Nucleoporin
           protein Ndc1-Nup (InterPro:IPR019049); Has 36 Blast hits
           to 36 proteins in 17 species: Archae - 0; Bacteria - 0;
           Metazoa - 1; Fungi - 0; Plants - 35; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr1:27542397-27544668 REVERSE LENGTH=519
          Length = 519

 Score =  378 bits (971), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/349 (58%), Positives = 253/349 (72%), Gaps = 3/349 (0%)

Query: 1   MGIPAAAKGSLKLSTVAFFFSAVLLDILPHSFKCSVATRAFFVEQIVFSFASFAVFLCWE 60
           +G+P+A   +LKLS V +  S ++L  L       V+   F  EQ++    SF + L WE
Sbjct: 173 IGLPSALTQALKLSGVLYVLSTIMLLFLLDWSGGLVSVSKFLGEQVLSYAGSFCLILSWE 232

Query: 61  VTHHLHRVLHTKRSIFAPPKGSAAAETNPSEHLLSALEESNPTSLLRYLAYLDLCMVCEN 120
           VTHH+H+VLHTKR  FAPPKGSAAAETNPSE LL+ALE S P SL + LAYLDL MV +N
Sbjct: 233 VTHHIHKVLHTKRFSFAPPKGSAAAETNPSEPLLAALEGSAPGSLEQSLAYLDLYMVSQN 292

Query: 121 NVDTWRRAAFFEETGETYKRVIAVCLRPLEHLASRLGEGLGNS-PDKPAQLSNQLLSPTD 179
           NVDTWRRAAFFEE+ ETYKRVI +CLRPLE LAS+L  GL ++  +K  Q    L  PT+
Sbjct: 293 NVDTWRRAAFFEESTETYKRVITLCLRPLEELASKLASGLDHTFTEKGYQ--TPLQPPTE 350

Query: 180 ARLDLKNGEELYNFQLHACCSRIVASLTACSRKEDKFGVAQLSGSNAAVVSTLISCLLAV 239
           + +D K GE L +FQL+A C++  ASLT+ S KED+ GVAQLSG NA VVSTL+S LLA+
Sbjct: 351 SFIDPKFGESLKSFQLYAWCAQTSASLTSISHKEDRLGVAQLSGGNADVVSTLLSLLLAI 410

Query: 240 ENFMGKKTNLQSPNQLLGPAGIKWATANSGRVDVPAVKRRTGPVNPKAYAIADVLRTSIY 299
           E FMGKKTNLQSP QL+GPA IKWAT++  R DV  +KR  G +   AYA  DVLR S+Y
Sbjct: 411 ETFMGKKTNLQSPQQLMGPASIKWATSSMVRKDVKPIKRSIGAMYAYAYAATDVLRISVY 470

Query: 300 QIVSAFHDEMLAGSKASLLEKDWITSGKPLFGTHEMLIQKLRLFLDFRA 348
           QI+S F DEML   +A LL +DWI S KP FGT++ML+QKL+LFL+F+A
Sbjct: 471 QILSTFRDEMLNSDRAGLLGRDWIGSKKPPFGTNDMLLQKLKLFLEFQA 519