Miyakogusa Predicted Gene

Lj6g3v1946530.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1946530.1 Non Chatacterized Hit- tr|B9SKQ1|B9SKQ1_RICCO
Brca1 associated ring domain, putative OS=Ricinus
comm,43.21,0.0000000000002,ZF_RING_1,Zinc finger, RING-type, conserved
site; RING/U-box,NULL; zf-C3HC4_2,NULL; ZF_RING_2,Zinc f,CUFF.60262.1
         (96 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21070.1 | Symbols: ATBRCA1, BRCA1 | breast cancer susceptibi...   150   1e-37
AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein | chr5:75...    57   3e-09
AT1G04020.1 | Symbols: ATBARD1, BARD1, ROW1 | breast cancer asso...    53   4e-08
AT1G04020.2 | Symbols: ATBARD1, BARD1 | breast cancer associated...    53   4e-08
AT2G32950.1 | Symbols: COP1, ATCOP1, DET340, FUS1, EMB168 | Tran...    52   7e-08
AT5G05130.1 | Symbols:  | DNA/RNA helicase protein | chr5:151217...    51   1e-07
AT5G43530.1 | Symbols:  | Helicase protein with RING/U-box domai...    50   3e-07
AT1G03770.1 | Symbols: ATRING1B, RING1B | RING 1B | chr1:944772-...    50   4e-07
AT1G03770.2 | Symbols: RING1B | RING 1B | chr1:944772-947431 FOR...    49   5e-07
AT1G03770.3 | Symbols: RING1B | RING 1B | chr1:944772-947431 FOR...    49   5e-07
AT5G44280.1 | Symbols: ATRING1A, RING1A | RING 1A | chr5:1783611...    48   1e-06
AT2G26350.1 | Symbols: PEX10, ATPEX10 | peroxin 10 | chr2:112177...    46   6e-06

>AT4G21070.1 | Symbols: ATBRCA1, BRCA1 | breast cancer
          susceptibility1 | chr4:11248174-11252633 FORWARD
          LENGTH=941
          Length = 941

 Score =  150 bits (380), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 66/89 (74%), Positives = 79/89 (88%)

Query: 4  LERMGRELKCPICLSLLDSAISLTCNHLFCNSCILKSMKSASACPVCKIPFTRREVRPAP 63
          LERMGRELKCPICLSL +SA+SL+CNH+FCN+CI+KSMK  + CPVCKIP+ RRE+R AP
Sbjct: 7  LERMGRELKCPICLSLYNSAVSLSCNHVFCNACIVKSMKMDATCPVCKIPYHRREIRGAP 66

Query: 64 HMDNLVTIYKNMEAASGITMFVTQNNLPP 92
          HMD+LV+IYKNME ASGI +FV+QNN  P
Sbjct: 67 HMDSLVSIYKNMEDASGIKLFVSQNNPSP 95


>AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein |
           chr5:7565374-7570871 REVERSE LENGTH=1029
          Length = 1029

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 6   RMGRELKCPICLSLLDSAISLTCNHLFCNSCILKSMKSASA--CPVCKIPFTRREVRPAP 63
           R G + +CPICL  L+ A+   C H  C  C+L S +++++  CPVC+   +++E+  AP
Sbjct: 787 RKGEQGECPICLEALEDAVLTPCAHRLCRECLLASWRNSTSGLCPVCRNTVSKQELITAP 846

Query: 64  HMDNL-VTIYKNMEAASGITMFVTQ 87
                 V + KN   +S IT  + +
Sbjct: 847 TESRFQVDVEKNWVESSKITALLEE 871


>AT1G04020.1 | Symbols: ATBARD1, BARD1, ROW1 | breast cancer
           associated RING 1 | chr1:1036610-1040045 FORWARD
           LENGTH=714
          Length = 714

 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 26  LTCNHLFCNSCILKSMKSASACPVCKIPFTRREVRPAPHMDNLVTIYKNMEAASGITMFV 85
           L C+H+FC+SC+ KS +  S CPVCK    ++  R    M+++++IYK++ AA  +++ +
Sbjct: 38  LPCDHVFCDSCVHKSSQVESGCPVCKSKHPKKARRDLRFMESVISIYKSLNAA--VSVHL 95

Query: 86  TQNNLP 91
            Q  +P
Sbjct: 96  PQLQIP 101


>AT1G04020.2 | Symbols: ATBARD1, BARD1 | breast cancer associated
           RING 1 | chr1:1036610-1040045 FORWARD LENGTH=713
          Length = 713

 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 26  LTCNHLFCNSCILKSMKSASACPVCKIPFTRREVRPAPHMDNLVTIYKNMEAASGITMFV 85
           L C+H+FC+SC+ KS +  S CPVCK    ++  R    M+++++IYK++ AA  +++ +
Sbjct: 38  LPCDHVFCDSCVHKSSQVESGCPVCKSKHPKKGKRDLRFMESVISIYKSLNAA--VSVHL 95

Query: 86  TQNNLP 91
            Q  +P
Sbjct: 96  PQLQIP 101


>AT2G32950.1 | Symbols: COP1, ATCOP1, DET340, FUS1, EMB168 |
           Transducin/WD40 repeat-like superfamily protein |
           chr2:13978000-13983282 FORWARD LENGTH=675
          Length = 675

 Score = 52.4 bits (124), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 7   MGRELKCPICLSLLDSAISLTCNHLFCNSCILKSMKSASACPVCKIPFTRREVRPAPHMD 66
           + ++L CPIC+ ++  A    C H FC  CI+  +++ S CP C    T  ++ P   +D
Sbjct: 46  LDKDLLCPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCSQHLTNNQLYPNFLLD 105

Query: 67  NLV 69
            L+
Sbjct: 106 KLL 108


>AT5G05130.1 | Symbols:  | DNA/RNA helicase protein |
           chr5:1512173-1514918 FORWARD LENGTH=862
          Length = 862

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 8   GRELKCPICLSLLDSAISLTCNHLFCNSCILKSM-KSASACPVCKIPFTRREVRPAP 63
           G +  CPIC+S   + I   C H+FC +CIL+++ +S   CP+C+   T+ ++  AP
Sbjct: 611 GEDFDCPICISPPTNIIITRCAHIFCRACILQTLQRSKPLCPLCRGSLTQSDLYNAP 667


>AT5G43530.1 | Symbols:  | Helicase protein with RING/U-box domain |
            chr5:17489327-17494830 FORWARD LENGTH=1277
          Length = 1277

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 6    RMGRELKCPICLSLLDSAISLTCNHLFCNSCILKSMKSASA--CPVCKIPFTRREVRPAP 63
            R G   +CPICL   D  +   C H  C  C+L S +S S   CP+C+    R E+   P
Sbjct: 1033 RDGNSKECPICLESADDPVLTPCAHRMCRECLLTSWRSPSCGLCPICRTILKRTELISCP 1092

Query: 64   HMDNL--VTIYKNMEAASGIT 82
              D++  V + KN + +S ++
Sbjct: 1093 -TDSIFRVDVVKNWKESSKVS 1112


>AT1G03770.1 | Symbols: ATRING1B, RING1B | RING 1B |
           chr1:944772-947431 FORWARD LENGTH=460
          Length = 460

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 4/78 (5%)

Query: 3   DLERMGRELKCPICLSLL-DSAISLTCNHLFCNSCILKSMK-SASACPVC-KIPFTRREV 59
           DL  + ++++C ICL ++  +   + C H FC  CI KSM+   + CP C K   +RR +
Sbjct: 93  DLADICKDVQCSICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPTCRKHCASRRSL 152

Query: 60  RPAPHMDNLV-TIYKNME 76
           R  P+ D L+  ++KN++
Sbjct: 153 RDDPNFDALIAALFKNID 170


>AT1G03770.2 | Symbols: RING1B | RING 1B | chr1:944772-947431
           FORWARD LENGTH=468
          Length = 468

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 4/78 (5%)

Query: 3   DLERMGRELKCPICLSLL-DSAISLTCNHLFCNSCILKSMK-SASACPVC-KIPFTRREV 59
           DL  + ++++C ICL ++  +   + C H FC  CI KSM+   + CP C K   +RR +
Sbjct: 95  DLADICKDVQCSICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPTCRKHCASRRSL 154

Query: 60  RPAPHMDNLV-TIYKNME 76
           R  P+ D L+  ++KN++
Sbjct: 155 RDDPNFDALIAALFKNID 172


>AT1G03770.3 | Symbols: RING1B | RING 1B | chr1:944772-947431
           FORWARD LENGTH=466
          Length = 466

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 4/78 (5%)

Query: 3   DLERMGRELKCPICLSLL-DSAISLTCNHLFCNSCILKSMK-SASACPVC-KIPFTRREV 59
           DL  + ++++C ICL ++  +   + C H FC  CI KSM+   + CP C K   +RR +
Sbjct: 93  DLADICKDVQCSICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPTCRKHCASRRSL 152

Query: 60  RPAPHMDNLV-TIYKNME 76
           R  P+ D L+  ++KN++
Sbjct: 153 RDDPNFDALIAALFKNID 170


>AT5G44280.1 | Symbols: ATRING1A, RING1A | RING 1A |
           chr5:17836115-17839114 REVERSE LENGTH=522
          Length = 522

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 4/79 (5%)

Query: 3   DLERMGRELKCPICLSLLDSAIS-LTCNHLFCNSCILKSMK-SASACPVCKIP-FTRREV 59
           DL  + ++++CPICL ++    + + C H FC  CI KSM+   + CP C+    +RR +
Sbjct: 126 DLGEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRKHCASRRSL 185

Query: 60  RPAPHMDNLV-TIYKNMEA 77
           R  P  D L+  ++ N+++
Sbjct: 186 RDDPKFDALIAALFTNIDS 204


>AT2G26350.1 | Symbols: PEX10, ATPEX10 | peroxin 10 |
           chr2:11217767-11220415 REVERSE LENGTH=381
          Length = 381

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%)

Query: 12  KCPICLSLLDSAISLTCNHLFCNSCILKSMKSASACPVCKIPFTRREVRPAPHMD 66
           KC +CLS      +  C H+FC SCI++       CP+C+ P T   +    H D
Sbjct: 326 KCTLCLSTRQHPTATPCGHVFCWSCIMEWCNEKQECPLCRTPNTHSSLVCLYHSD 380