Miyakogusa Predicted Gene

Lj6g3v1946520.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1946520.1 Non Chatacterized Hit- tr|B4FYI5|B4FYI5_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,28.02,2e-18,BRCT,BRCT
domain; BRCT domain,BRCT domain; seg,NULL; SUBFAMILY NOT NAMED,NULL;
FAMILY NOT NAMED,NULL,CUFF.60261.1
         (614 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21070.1 | Symbols: ATBRCA1, BRCA1 | breast cancer susceptibi...   451   e-127
AT1G04020.1 | Symbols: ATBARD1, BARD1, ROW1 | breast cancer asso...   360   2e-99
AT1G04020.2 | Symbols: ATBARD1, BARD1 | breast cancer associated...   360   2e-99
AT3G15120.1 | Symbols:  | P-loop containing nucleoside triphosph...    50   4e-06

>AT4G21070.1 | Symbols: ATBRCA1, BRCA1 | breast cancer
           susceptibility1 | chr4:11248174-11252633 FORWARD
           LENGTH=941
          Length = 941

 Score =  451 bits (1160), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/397 (54%), Positives = 286/397 (72%), Gaps = 16/397 (4%)

Query: 225 LRRCE-SHVKKYQCVFCLLSEESEASGPMVHYFDGKPVPADYEGGSKVIHCHRSCTEWAP 283
           LRRC  S  KK+ C FC  SE++EASG M HY+ G+PV AD+ GGSKVIH H++C EWAP
Sbjct: 551 LRRCNGSLTKKFTCAFCQCSEDTEASGEMTHYYRGEPVSADFNGGSKVIHVHKNCAEWAP 610

Query: 284 NVYFEDDNAINLEAEISRSRRIKCSFCGTKGAALGCYEKSCRKSFHVPCAKWTSQCRWDM 343
           NVYF D   +NL+ E++RSRRI CS CG KGAALGCY KSC+ SFHV CAK   +CRWD 
Sbjct: 611 NVYFNDLTIVNLDVELTRSRRISCSCCGLKGAALGCYNKSCKNSFHVTCAKLIPECRWDN 670

Query: 344 ENFVMLCPLHASSKLPNESSGSQERSKKGT------GEGKSRGFKHDTKS-QTRTAHGSY 396
             FVMLCPL AS KLP E + S++R  K T       + K    K + +    +  HG  
Sbjct: 671 VKFVMLCPLDASIKLPCEEANSKDRKCKRTPKEPLHSQPKQVSGKANIRELHIKQFHGFS 730

Query: 397 KKIILCCSALSMQEKDVVSEFERATKVTVLKNWDSSVTHIIAAVDENGACRRTLKVLLGI 456
           KK++L CS L+++EK V++EF   + VT+ KNWDS+VTH+IA+++ENGAC+RTLK ++ I
Sbjct: 731 KKLVLSCSGLTVEEKTVIAEFAELSGVTISKNWDSTVTHVIASINENGACKRTLKFMMAI 790

Query: 457 LEGKWILNIDWIKACMKEMEPVDEESYEINLDIHGIRDGPRLGRLRVLNKQPKLFDGYKF 516
           LEGKWIL IDWIKACMK  + V EE YEI +D+HGIR+GP LGR R L K+PKLF G KF
Sbjct: 791 LEGKWILTIDWIKACMKNTKYVSEEPYEITMDVHGIREGPYLGRQRALKKKPKLFTGLKF 850

Query: 517 YFMGDFMPSYKGFLQDIVIAAGGLVLHRKPVLA-DHPHQTLIIYSLELPNKCNPSEKDTI 575
           Y MGDF  +YKG+LQD+++AAGG +L R+PV + D+   T++++S+E      PS+K T+
Sbjct: 851 YIMGDFELAYKGYLQDLIVAAGGTILRRRPVSSDDNEASTIVVFSVE------PSKKKTL 904

Query: 576 FSRRRSDAEVLASSTGSKVASNTWILNSIAACKLQCL 612
            ++RRSDAE LA S  ++ AS++W+L+SIA C++  L
Sbjct: 905 -TQRRSDAEALAKSARARAASSSWVLDSIAGCQILVL 940


>AT1G04020.1 | Symbols: ATBARD1, BARD1, ROW1 | breast cancer
           associated RING 1 | chr1:1036610-1040045 FORWARD
           LENGTH=714
          Length = 714

 Score =  360 bits (923), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 177/382 (46%), Positives = 242/382 (63%), Gaps = 13/382 (3%)

Query: 237 CVFCLLSEESEASGPMVHYFDGKPVPADYEGGSKVIHCHRSCTEWAPNVYFEDDNAINLE 296
           C FC  +  SEA+G M+HY  G+PV  D    S VIH H +C EWAP VY+E D   NL+
Sbjct: 334 CGFCQSARVSEATGEMLHYSRGRPVDGDDIFRSNVIHVHSACIEWAPQVYYEGDTVKNLK 393

Query: 297 AEISRSRRIKCSFCGTKGAALGCYEKSCRKSFHVPCAKWTSQCRWDMENFVMLCPLHASS 356
           AE++R  +IKC+ C  KGAALGC+ KSCR+S+HVPCA+  S+CRWD E+F++LCP H+S 
Sbjct: 394 AELARGMKIKCTKCSLKGAALGCFVKSCRRSYHVPCAREISRCRWDYEDFLLLCPAHSSV 453

Query: 357 KLPNESSGSQERSKKGTGEGKSRGFKHDTKSQTRTAHGSYKKIILCCSALSMQEKDVVSE 416
           K PNE SG   R  +     K    +  +  QT       K+++LC SALS  +K ++  
Sbjct: 454 KFPNEKSG--HRVSRAEPLPKINPAELCSLEQTP---AFTKELVLCGSALSKSDKKLMES 508

Query: 417 FERATKVTVLKNWDSSVTHIIAAVDENGACRRTLKVLLGILEGKWILNIDWIKACMKEME 476
                  T+ + W+ SVTH+IA+ DE GAC RTLKVL+GIL GKWI+N  W+KA +K  +
Sbjct: 509 LAVRFNATISRYWNPSVTHVIASTDEKGACTRTLKVLMGILNGKWIINAAWMKASLKASQ 568

Query: 477 PVDEESYEINLDIHGIRDGPRLGRLRVLNKQPKLFDGYKFYFMGDFMPSYKGFLQDIVIA 536
           PVDEE +EI +D  G +DGP+  RLR    +PKLF+G KFYF GDF   YK  LQ++V  
Sbjct: 569 PVDEEPFEIQIDTQGCQDGPKTARLRAETNKPKLFEGLKFYFFGDFYKGYKEDLQNLVKV 628

Query: 537 AGGLVLHRKPVLA--------DHPHQTLIIYSLELPNKCNPSEKDTIFSRRRSDAEVLAS 588
           AGG +L+ +  L         D    ++++Y+++ P+ C   E+ TI  +R +DAE LAS
Sbjct: 629 AGGTILNTEDELGAESSNNVNDQRSSSIVVYNIDPPHGCALGEEVTIIWQRANDAEALAS 688

Query: 589 STGSKVASNTWILNSIAACKLQ 610
            TGS++  +TW+L SIA  KL 
Sbjct: 689 QTGSRLVGHTWVLESIAGYKLH 710


>AT1G04020.2 | Symbols: ATBARD1, BARD1 | breast cancer associated
           RING 1 | chr1:1036610-1040045 FORWARD LENGTH=713
          Length = 713

 Score =  360 bits (923), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 177/382 (46%), Positives = 242/382 (63%), Gaps = 13/382 (3%)

Query: 237 CVFCLLSEESEASGPMVHYFDGKPVPADYEGGSKVIHCHRSCTEWAPNVYFEDDNAINLE 296
           C FC  +  SEA+G M+HY  G+PV  D    S VIH H +C EWAP VY+E D   NL+
Sbjct: 333 CGFCQSARVSEATGEMLHYSRGRPVDGDDIFRSNVIHVHSACIEWAPQVYYEGDTVKNLK 392

Query: 297 AEISRSRRIKCSFCGTKGAALGCYEKSCRKSFHVPCAKWTSQCRWDMENFVMLCPLHASS 356
           AE++R  +IKC+ C  KGAALGC+ KSCR+S+HVPCA+  S+CRWD E+F++LCP H+S 
Sbjct: 393 AELARGMKIKCTKCSLKGAALGCFVKSCRRSYHVPCAREISRCRWDYEDFLLLCPAHSSV 452

Query: 357 KLPNESSGSQERSKKGTGEGKSRGFKHDTKSQTRTAHGSYKKIILCCSALSMQEKDVVSE 416
           K PNE SG   R  +     K    +  +  QT       K+++LC SALS  +K ++  
Sbjct: 453 KFPNEKSG--HRVSRAEPLPKINPAELCSLEQTP---AFTKELVLCGSALSKSDKKLMES 507

Query: 417 FERATKVTVLKNWDSSVTHIIAAVDENGACRRTLKVLLGILEGKWILNIDWIKACMKEME 476
                  T+ + W+ SVTH+IA+ DE GAC RTLKVL+GIL GKWI+N  W+KA +K  +
Sbjct: 508 LAVRFNATISRYWNPSVTHVIASTDEKGACTRTLKVLMGILNGKWIINAAWMKASLKASQ 567

Query: 477 PVDEESYEINLDIHGIRDGPRLGRLRVLNKQPKLFDGYKFYFMGDFMPSYKGFLQDIVIA 536
           PVDEE +EI +D  G +DGP+  RLR    +PKLF+G KFYF GDF   YK  LQ++V  
Sbjct: 568 PVDEEPFEIQIDTQGCQDGPKTARLRAETNKPKLFEGLKFYFFGDFYKGYKEDLQNLVKV 627

Query: 537 AGGLVLHRKPVLA--------DHPHQTLIIYSLELPNKCNPSEKDTIFSRRRSDAEVLAS 588
           AGG +L+ +  L         D    ++++Y+++ P+ C   E+ TI  +R +DAE LAS
Sbjct: 628 AGGTILNTEDELGAESSNNVNDQRSSSIVVYNIDPPHGCALGEEVTIIWQRANDAEALAS 687

Query: 589 STGSKVASNTWILNSIAACKLQ 610
            TGS++  +TW+L SIA  KL 
Sbjct: 688 QTGSRLVGHTWVLESIAGYKLH 709


>AT3G15120.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr3:5088487-5095482
           REVERSE LENGTH=1954
          Length = 1954

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 12/80 (15%)

Query: 275 HRSCTEWAPNVYFEDDNAI-NLEAEISRSRRIKCSFCGTKGAALGCYEKSCRKSFHVPCA 333
           H++C  W+P VYF     + N+ A + R R +KC+ C   GA  GC           PCA
Sbjct: 561 HQNCAVWSPEVYFAGVGCLKNIRAALFRGRSLKCTRCDRPGATTGCR----------PCA 610

Query: 334 KWTSQCRWDMENFVMLCPLH 353
           +  + C +D   F++ C  H
Sbjct: 611 R-ANGCIFDHRKFLIACTDH 629