Miyakogusa Predicted Gene
- Lj6g3v1946500.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1946500.1 Non Chatacterized Hit- tr|B8BBH4|B8BBH4_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,38.26,0.000000000008,RNI-like,NULL; Leucine-rich repeat - CC
(cysteine-containin,Leucine-rich repeat,
cysteine-containing,CUFF.60259.1
(315 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G05460.1 | Symbols: | RNI-like superfamily protein | chr4:27... 261 4e-70
AT4G05475.1 | Symbols: | RNI-like superfamily protein | chr4:27... 228 6e-60
AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:27... 215 4e-56
AT4G05490.1 | Symbols: | RNI-like superfamily protein | chr4:27... 208 4e-54
AT4G05497.1 | Symbols: | RNI-like superfamily protein | chr4:27... 207 8e-54
AT4G03630.1 | Symbols: | RNI-like superfamily protein | chr4:16... 185 3e-47
AT5G52480.1 | Symbols: | RNI-like superfamily protein | chr5:21... 165 4e-41
AT5G52480.2 | Symbols: | RNI-like superfamily protein | chr5:21... 130 1e-30
AT4G08980.5 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-... 102 4e-22
AT4G08980.4 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-... 102 4e-22
AT4G08980.2 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-... 102 4e-22
AT4G08980.3 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-... 102 4e-22
AT4G08980.1 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-... 102 4e-22
AT5G57900.1 | Symbols: SKIP1 | SKP1 interacting partner 1 | chr5... 87 2e-17
AT4G30640.1 | Symbols: | RNI-like superfamily protein | chr4:14... 73 2e-13
AT3G48880.2 | Symbols: | RNI-like superfamily protein | chr3:18... 70 2e-12
AT3G48880.1 | Symbols: | RNI-like superfamily protein | chr3:18... 70 2e-12
AT5G23340.1 | Symbols: | RNI-like superfamily protein | chr5:78... 54 1e-07
AT4G03635.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 52 7e-07
AT4G11580.1 | Symbols: | RNI-like superfamily protein | chr4:70... 50 1e-06
AT5G27920.1 | Symbols: | F-box family protein | chr5:9942063-99... 48 7e-06
>AT4G05460.1 | Symbols: | RNI-like superfamily protein |
chr4:2761106-2762400 REVERSE LENGTH=302
Length = 302
Score = 261 bits (668), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 142/285 (49%), Positives = 179/285 (62%), Gaps = 14/285 (4%)
Query: 5 SSSNSKALADSGEERNWLDLPRDVASTIFLKLGAIEILTTVQRVCSVWRNITKDPTMWRT 64
SSS+ A + GE NW +LP ++ S I +LGAIEIL Q+VC WR + KDP+MWR
Sbjct: 3 SSSSPPAAMEVGESTNWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRK 62
Query: 65 IDMHNLGD---SRYNLDTICRRAIDYSSGHLLDINIEYFGTDDLLDYITDSTSHLRRLRL 121
IDMHNLGD YNL+ +CR A+D S G L+DI I YFGT DLL+YI +S+LR LRL
Sbjct: 63 IDMHNLGDLDDMDYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRL 122
Query: 122 ACCYSISDEGLSEIAKKFPQXXXXXXXXXXXXKEPLEVIGRSCPRLKTLKFNMEGYRRPH 181
C I+D+G E K P E L V+G+ C +KTLK N + P
Sbjct: 123 IRCSQITDDGFVEAVVKLPLEELELSYCSFSV-ESLRVVGQCCLNMKTLKLN----KHPQ 177
Query: 182 IESDEEAFAVAETMPELRHLQLFGNKLTNDGLLAILDGCPHLETLDLRQCFNVNLAGSLG 241
E+D++A A+AETMP+LRHLQL GN L++ GL AILD C +LE LDLR+CFNVNL G L
Sbjct: 178 KENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVNLVGDLQ 237
Query: 242 KRCAEQIKDLRLPNDPADDYPFEAEIDYGSLDEDYPSGFSDIAFL 286
KRC E +K +R PND D ID GS +++ P FSDI +
Sbjct: 238 KRCFESVKVVRHPNDSIHD------IDIGSSEDEDPYDFSDIDLM 276
>AT4G05475.1 | Symbols: | RNI-like superfamily protein |
chr4:2765962-2767957 REVERSE LENGTH=309
Length = 309
Score = 228 bits (580), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 115/274 (41%), Positives = 172/274 (62%), Gaps = 13/274 (4%)
Query: 6 SSNSKALADSGEER-NWLDLPRDVASTIFLKLGAIEILTTVQRVCSVWRNITKDPTMWRT 64
++++ L EER NW+DLP ++ ++I L+L +IL +++C WR I KDP+MWR
Sbjct: 24 TTSTMFLKKDDEERINWVDLPPELTTSILLRLSVTDILDNARKLCRAWRRICKDPSMWRK 83
Query: 65 IDMHNLGDSRYNLDTICRRAIDYSSGHLLDINIEYFGTDDLLDYITDSTSHLRRLRLACC 124
I++ + ++ +++CR +D S G LL+INIE+F +D LL YI D + +L+ L ++
Sbjct: 84 INLRDCLMYEFDFESMCRHIVDLSQGGLLEINIEHFVSDSLLSYIVDRSCNLKSLGISIY 143
Query: 125 YSISDEGLSEIAKKFPQXXXXXXXXXXXXKEPLEVIGRSCPRLKTLKFNMEGYRRPH--- 181
++++G+ +K P K L+ IG +CP+LKTLK N G H
Sbjct: 144 EPMTNKGVMNGIEKLP-LLETLVIFHSSIKLDLKAIGHACPQLKTLKLNSLGSELAHDIS 202
Query: 182 -------IESDEEAFAVAETMPELRHLQLFGNKLTNDGLLAILDGCPHLET-LDLRQCFN 233
+E D++A A+AE+MP+LRHLQL GN LTN GL AILDGCPHLE LD+R+CFN
Sbjct: 203 QVGYIPLLECDDDALAIAESMPKLRHLQLMGNGLTNTGLNAILDGCPHLEEHLDVRKCFN 262
Query: 234 VNLAGSLGKRCAEQIKDLRLPNDPADDYPFEAEI 267
+NL G+L KRC ++IK+LR P+D DYP+ +
Sbjct: 263 INLVGNLEKRCMKRIKELRRPHDSTADYPYSISV 296
>AT4G05470.1 | Symbols: | RNI-like superfamily protein |
chr4:2763256-2765351 REVERSE LENGTH=304
Length = 304
Score = 215 bits (547), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 115/265 (43%), Positives = 157/265 (59%), Gaps = 19/265 (7%)
Query: 17 EERNWLDLPRDVASTIFLKLGAIEILTTVQRVCSVWRNITKDPTMWRTIDMHNLGDSRYN 76
E RNW+DLP ++ ++I L+L +IL Q+VC WR I KDP+MWR I+ + ++
Sbjct: 42 ERRNWVDLPPELTTSILLRLSLTDILDNAQKVCKEWRRICKDPSMWRKINTRDCLMYNFD 101
Query: 77 LDTICRRAIDYSSGHLLDINI-EYFGTDDLLDYITDSTSHLRRLRLACCY-SISDEGLSE 134
++CR +D S G LL+IN+ E+F +D LL YITD +LR L L C+ ++ G+
Sbjct: 102 FVSMCRHIVDLSQGGLLEINVDEHFLSDSLLSYITDR--NLRSLGLGMCFPRVTKLGVVN 159
Query: 135 IAKKFPQXXXXXXXXXXXXKEPLEVIGRSCPRLKTLKFNMEGYRRPH------------- 181
K P K L+ IG +CP+LKTLK N G P
Sbjct: 160 AIAKIP-LLETLEVTHSCIKLDLKAIGHACPQLKTLKLNSLGRLWPASDKYDSNVLDDMG 218
Query: 182 -IESDEEAFAVAETMPELRHLQLFGNKLTNDGLLAILDGCPHLETLDLRQCFNVNLAGSL 240
+E D++A A+AE+MP+L HLQL N+LTN GL AILDGCPHLE LD+R+CF ++L G+L
Sbjct: 219 PLECDDDALAIAESMPKLHHLQLMANRLTNTGLNAILDGCPHLEHLDVRKCFRISLVGNL 278
Query: 241 GKRCAEQIKDLRLPNDPADDYPFEA 265
KRC E IK+LR P D DYP+
Sbjct: 279 EKRCLEMIKELRRPGDSTADYPYNG 303
>AT4G05490.1 | Symbols: | RNI-like superfamily protein |
chr4:2771044-2772252 REVERSE LENGTH=307
Length = 307
Score = 208 bits (529), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 129/280 (46%), Positives = 170/280 (60%), Gaps = 15/280 (5%)
Query: 5 SSSNSKALADS------GEER--NWLDLPRDVASTIFLKLGAIEILTTVQRVCSVWRNIT 56
+SS+S LA S GEE+ NW +LP D+ S+I L+L +EIL ++VC WR ++
Sbjct: 3 TSSSSPPLATSQLPVMKGEEKPSNWAELPPDLLSSILLRLSPLEILENARKVCRSWRRVS 62
Query: 57 KDPTMWRTIDMHNLGD--SRYNLDTICRRAIDYSSGHLLDINIEY--FGTDDLLDYITDS 112
KDP +WR IDM NL Y ++ CR +D S G LL+ NI+ F T LL+Y+ +
Sbjct: 63 KDPLIWRRIDMRNLRRLYCIYAMEACCRHVVDLSQGGLLEFNIDQWRFQTTSLLNYMAER 122
Query: 113 TSHLRRLRLACCYSISDEGLSEIAKKFPQXXXXXXXXXXXXKEPLEVIGRSCPRLKTLKF 172
+S+LRRLR+ I+ G+ E K P +E + IG++CP LKTLK
Sbjct: 123 SSNLRRLRVKG-GQITSVGIFEAIVKLPLLEELELLYCSIEEEHFKTIGQACPNLKTLK- 180
Query: 173 NMEGYRRPHIESDEEAFAVAETMPELRHLQLFGNKLTNDGLLAILDGCPHLETLDLRQCF 232
+ G+ ESD +A A+A+TMP L HLQL N LTN GL AILDGCPHLE LDLRQCF
Sbjct: 181 -LVGFWSHLNESDNDALAIADTMPGLLHLQLISNGLTNIGLNAILDGCPHLECLDLRQCF 239
Query: 233 NVNLAGSLGKRCAEQIKDLRLPNDPADDYPFEAEIDYGSL 272
N+NL G L ++C E+IKD R PND DDY + D GS+
Sbjct: 240 NINLFGDLERQCLERIKDFRCPNDVLDDYNYVIFSDNGSI 279
>AT4G05497.1 | Symbols: | RNI-like superfamily protein |
chr4:2777903-2778801 REVERSE LENGTH=246
Length = 246
Score = 207 bits (527), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 109/235 (46%), Positives = 146/235 (62%), Gaps = 10/235 (4%)
Query: 15 SGEERNWLDLPRDVASTIFLKLGAIEILTTVQRVCSVWRNITKDPTMWRTIDMH---NLG 71
+GE RNW +LP ++ S+I L+LGAIEIL QRVC WR + +DP+MWR ID+ NL
Sbjct: 15 NGEYRNWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLV 74
Query: 72 DSR---YNLDTICRRAIDYSSGHLLDINIEYFGTDDLLDYITDSTSHLRRLRLACCYSIS 128
+S Y ++ +C RA+D S G LL+INI+Y L+YI D +S+LRRL + C +
Sbjct: 75 NSVELFYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAPVL 134
Query: 129 DEGLSEIAKKFPQXXXXXXXXXXXXKEP-LEVIGRSCPRLKTLKFNMEGYRRPHIESDEE 187
G+ E A K P +E L+V+G+SCP L+TLK N G + D+
Sbjct: 135 SRGVVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLNCTGDVKC---CDKV 191
Query: 188 AFAVAETMPELRHLQLFGNKLTNDGLLAILDGCPHLETLDLRQCFNVNLAGSLGK 242
A A+AETMP LRHLQLF N L+ GL AIL+GCPHL+ L L QC N+N+ G + K
Sbjct: 192 ALAIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLGLHQCLNINIVGDIVK 246
>AT4G03630.1 | Symbols: | RNI-like superfamily protein |
chr4:1608750-1610037 FORWARD LENGTH=220
Length = 220
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 94/184 (51%), Positives = 118/184 (64%)
Query: 84 AIDYSSGHLLDINIEYFGTDDLLDYITDSTSHLRRLRLACCYSISDEGLSEIAKKFPQXX 143
A+ S G ++INIE+FGTD LL YI D +S+LR L LA C I+ GL A K P
Sbjct: 32 AVALSQGGCVEINIEHFGTDSLLTYIADRSSNLRHLGLAKCDQITGMGLFTEAMKLPLLE 91
Query: 144 XXXXXXXXXXKEPLEVIGRSCPRLKTLKFNMEGYRRPHIESDEEAFAVAETMPELRHLQL 203
+ LE IG +C LKTLK N +G++ P D +A +A+ MPELR LQL
Sbjct: 92 DLELSYCLIKGKNLEAIGFACLHLKTLKLNCQGFKFPGFTYDHDALGIAKRMPELRCLQL 151
Query: 204 FGNKLTNDGLLAILDGCPHLETLDLRQCFNVNLAGSLGKRCAEQIKDLRLPNDPADDYPF 263
FGN++++ GL AI DGCPHLE LDLRQCFN+NL G L KRC E+IKDLR PND DYP+
Sbjct: 152 FGNRVSDVGLNAIFDGCPHLEHLDLRQCFNINLVGDLEKRCMERIKDLRRPNDSTADYPY 211
Query: 264 EAEI 267
+ +
Sbjct: 212 DTSL 215
>AT5G52480.1 | Symbols: | RNI-like superfamily protein |
chr5:21296918-21297762 REVERSE LENGTH=241
Length = 241
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 98/195 (50%), Positives = 119/195 (61%), Gaps = 5/195 (2%)
Query: 76 NLDTICRRAIDYSSGHLLDINIEYFGTDDLLDYITDSTSHLRRLRLACCYSISDEGLSEI 135
N + ICR A+D S G LL+INI FG+D LL YI + +S+LR LRL C I+D+G +
Sbjct: 14 NPEAICRNAVDRSEGGLLEINIGDFGSDSLLTYIAERSSNLRSLRLMCS-EITDDGFVQA 72
Query: 136 AKKFPQXXXXXXXXXXXXKEPLEVIGRSCPRLKTLKFNMEGYRRPHIESDEEAFAVAETM 195
K P E +++ G SCP LKTL N Y + + A+AE+M
Sbjct: 73 VVKLPMLEELEVSGISLSGESMKLAGLSCPNLKTLMLNRLFYLSSDDDDHDAI-AIAESM 131
Query: 196 PELRHLQLFGNKLTNDGLLAILDGCPHLETLDLRQCFNVNLAGSLGKRCAEQIKDLRLPN 255
P+LRHLQL GNKLT GL AILDGCPHLE LDLRQC +NL G+L KRC E+IKDLR N
Sbjct: 132 PKLRHLQLCGNKLTKTGLNAILDGCPHLEHLDLRQC--INLVGNLEKRCFEKIKDLRRHN 189
Query: 256 DPAD-DYPFEAEIDY 269
D DYPF E Y
Sbjct: 190 DSTSADYPFSFETYY 204
>AT5G52480.2 | Symbols: | RNI-like superfamily protein |
chr5:21296918-21297529 REVERSE LENGTH=203
Length = 203
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 98/167 (58%), Gaps = 5/167 (2%)
Query: 104 DLLDYITDSTSHLRRLRLACCYSISDEGLSEIAKKFPQXXXXXXXXXXXXKEPLEVIGRS 163
+ L IT +S+LR LRL C I+D+G + K P E +++ G S
Sbjct: 4 NFLHTITCRSSNLRSLRLMCS-EITDDGFVQAVVKLPMLEELEVSGISLSGESMKLAGLS 62
Query: 164 CPRLKTLKFNMEGYRRPHIESDEEAFAVAETMPELRHLQLFGNKLTNDGLLAILDGCPHL 223
CP LKTL N Y + + A+AE+MP+LRHLQL GNKLT GL AILDGCPHL
Sbjct: 63 CPNLKTLMLNRLFYLSSDDDDHDAI-AIAESMPKLRHLQLCGNKLTKTGLNAILDGCPHL 121
Query: 224 ETLDLRQCFNVNLAGSLGKRCAEQIKDLRLPNDPAD-DYPFEAEIDY 269
E LDLRQC +NL G+L KRC E+IKDLR ND DYPF E Y
Sbjct: 122 EHLDLRQC--INLVGNLEKRCFEKIKDLRRHNDSTSADYPFSFETYY 166
>AT4G08980.5 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
chr4:5758993-5760108 FORWARD LENGTH=317
Length = 317
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 118/243 (48%), Gaps = 11/243 (4%)
Query: 17 EERNWLDLPRDVASTIFLKLGAIEILTTVQRVCSVWRNITKDPTMWRTIDMHNLGDSRYN 76
E R+W +L D IF L E+LT V RVC W P W+ ID+ L +R++
Sbjct: 6 EFRHWDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDI-ELWSNRFH 64
Query: 77 ----LDTICRRAIDYSSGHLLDINIEYFGTDDLLDYITDSTSHLRRLRLACCYSISDEGL 132
LD + I S+G L +++ D + +I L+ L++ +++ G+
Sbjct: 65 QSDHLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPRS-GLTNSGV 123
Query: 133 SEIAKKFPQXXXX-XXXXXXXXKEPLEVIGRSCPRLKTLKFNMEGYRRPHIES-DEEAFA 190
+A+K E ++ IG+ C L+ NM + S D+EA+A
Sbjct: 124 VNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYA 183
Query: 191 VAETMPELRHLQLFGNKLTNDGLLAILDGCPHLETLDLRQCFNVNLAGSLGKRCAEQIKD 250
+A TMP+L+ L++ ++++ +G+L IL C LE L+LR C++V L K E+ D
Sbjct: 184 IANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFK---EKFPD 240
Query: 251 LRL 253
+++
Sbjct: 241 MKV 243
>AT4G08980.4 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
chr4:5758993-5760108 FORWARD LENGTH=317
Length = 317
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 118/243 (48%), Gaps = 11/243 (4%)
Query: 17 EERNWLDLPRDVASTIFLKLGAIEILTTVQRVCSVWRNITKDPTMWRTIDMHNLGDSRYN 76
E R+W +L D IF L E+LT V RVC W P W+ ID+ L +R++
Sbjct: 6 EFRHWDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDI-ELWSNRFH 64
Query: 77 ----LDTICRRAIDYSSGHLLDINIEYFGTDDLLDYITDSTSHLRRLRLACCYSISDEGL 132
LD + I S+G L +++ D + +I L+ L++ +++ G+
Sbjct: 65 QSDHLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPRS-GLTNSGV 123
Query: 133 SEIAKKFPQXXXX-XXXXXXXXKEPLEVIGRSCPRLKTLKFNMEGYRRPHIES-DEEAFA 190
+A+K E ++ IG+ C L+ NM + S D+EA+A
Sbjct: 124 VNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYA 183
Query: 191 VAETMPELRHLQLFGNKLTNDGLLAILDGCPHLETLDLRQCFNVNLAGSLGKRCAEQIKD 250
+A TMP+L+ L++ ++++ +G+L IL C LE L+LR C++V L K E+ D
Sbjct: 184 IANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFK---EKFPD 240
Query: 251 LRL 253
+++
Sbjct: 241 MKV 243
>AT4G08980.2 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
chr4:5758993-5760108 FORWARD LENGTH=317
Length = 317
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 118/243 (48%), Gaps = 11/243 (4%)
Query: 17 EERNWLDLPRDVASTIFLKLGAIEILTTVQRVCSVWRNITKDPTMWRTIDMHNLGDSRYN 76
E R+W +L D IF L E+LT V RVC W P W+ ID+ L +R++
Sbjct: 6 EFRHWDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDI-ELWSNRFH 64
Query: 77 ----LDTICRRAIDYSSGHLLDINIEYFGTDDLLDYITDSTSHLRRLRLACCYSISDEGL 132
LD + I S+G L +++ D + +I L+ L++ +++ G+
Sbjct: 65 QSDHLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPRS-GLTNSGV 123
Query: 133 SEIAKKFPQXXXX-XXXXXXXXKEPLEVIGRSCPRLKTLKFNMEGYRRPHIES-DEEAFA 190
+A+K E ++ IG+ C L+ NM + S D+EA+A
Sbjct: 124 VNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYA 183
Query: 191 VAETMPELRHLQLFGNKLTNDGLLAILDGCPHLETLDLRQCFNVNLAGSLGKRCAEQIKD 250
+A TMP+L+ L++ ++++ +G+L IL C LE L+LR C++V L K E+ D
Sbjct: 184 IANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFK---EKFPD 240
Query: 251 LRL 253
+++
Sbjct: 241 MKV 243
>AT4G08980.3 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
chr4:5758993-5760108 FORWARD LENGTH=317
Length = 317
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 118/243 (48%), Gaps = 11/243 (4%)
Query: 17 EERNWLDLPRDVASTIFLKLGAIEILTTVQRVCSVWRNITKDPTMWRTIDMHNLGDSRYN 76
E R+W +L D IF L E+LT V RVC W P W+ ID+ L +R++
Sbjct: 6 EFRHWDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDI-ELWSNRFH 64
Query: 77 ----LDTICRRAIDYSSGHLLDINIEYFGTDDLLDYITDSTSHLRRLRLACCYSISDEGL 132
LD + I S+G L +++ D + +I L+ L++ +++ G+
Sbjct: 65 QSDHLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPRS-GLTNSGV 123
Query: 133 SEIAKKFPQXXXX-XXXXXXXXKEPLEVIGRSCPRLKTLKFNMEGYRRPHIES-DEEAFA 190
+A+K E ++ IG+ C L+ NM + S D+EA+A
Sbjct: 124 VNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYA 183
Query: 191 VAETMPELRHLQLFGNKLTNDGLLAILDGCPHLETLDLRQCFNVNLAGSLGKRCAEQIKD 250
+A TMP+L+ L++ ++++ +G+L IL C LE L+LR C++V L K E+ D
Sbjct: 184 IANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFK---EKFPD 240
Query: 251 LRL 253
+++
Sbjct: 241 MKV 243
>AT4G08980.1 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
chr4:5758993-5760108 FORWARD LENGTH=317
Length = 317
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 118/243 (48%), Gaps = 11/243 (4%)
Query: 17 EERNWLDLPRDVASTIFLKLGAIEILTTVQRVCSVWRNITKDPTMWRTIDMHNLGDSRYN 76
E R+W +L D IF L E+LT V RVC W P W+ ID+ L +R++
Sbjct: 6 EFRHWDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDI-ELWSNRFH 64
Query: 77 ----LDTICRRAIDYSSGHLLDINIEYFGTDDLLDYITDSTSHLRRLRLACCYSISDEGL 132
LD + I S+G L +++ D + +I L+ L++ +++ G+
Sbjct: 65 QSDHLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPRS-GLTNSGV 123
Query: 133 SEIAKKFPQXXXX-XXXXXXXXKEPLEVIGRSCPRLKTLKFNMEGYRRPHIES-DEEAFA 190
+A+K E ++ IG+ C L+ NM + S D+EA+A
Sbjct: 124 VNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYA 183
Query: 191 VAETMPELRHLQLFGNKLTNDGLLAILDGCPHLETLDLRQCFNVNLAGSLGKRCAEQIKD 250
+A TMP+L+ L++ ++++ +G+L IL C LE L+LR C++V L K E+ D
Sbjct: 184 IANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFK---EKFPD 240
Query: 251 LRL 253
+++
Sbjct: 241 MKV 243
>AT5G57900.1 | Symbols: SKIP1 | SKP1 interacting partner 1 |
chr5:23449916-23450915 REVERSE LENGTH=300
Length = 300
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 108/242 (44%), Gaps = 27/242 (11%)
Query: 20 NWLDLPRDVASTIFLKLGAIEILTTVQRVCSVWRNITKDPTMWRTIDMHNLGDS------ 73
+W L ++ I +L E+ T V W + +DP +W D+ DS
Sbjct: 7 DWGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPWFDSYPESTH 66
Query: 74 ------RYNLDTICRRAIDYSSGHLLDINIEYFGTDDLLDYITDSTSHLRRLRLACCYSI 127
+D + R +D+S G L I + + +D L Y D +L+ L + ++
Sbjct: 67 LWSPEFEQKVDLMLRSVVDWSEGGLTKIRVRH-CSDHALSYAADRCPNLQVLAIRSSPNV 125
Query: 128 SDEGLSEIAKKFPQXXXXXXXX-XXXXKEPLEVIGRSCPRLKTLKFNMEGYRRPHIES-- 184
+D +++IA + + L +IGR+CP L+ LK N+ + HI S
Sbjct: 126 TDASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDWSSRHIGSVP 185
Query: 185 -----------DEEAFAVAETMPELRHLQLFGNKLTNDGLLAILDGCPHLETLDLRQCFN 233
D EA A+ + M L HL++ ++L+ GL +I +GCP LE LDL C +
Sbjct: 186 TEYLDACPQDGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDLFGCVH 245
Query: 234 VN 235
++
Sbjct: 246 LS 247
>AT4G30640.1 | Symbols: | RNI-like superfamily protein |
chr4:14952670-14953682 FORWARD LENGTH=301
Length = 301
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 105/253 (41%), Gaps = 29/253 (11%)
Query: 10 KALADSGEERNWLDLPRDVASTIFLKLGAIEILTTVQRVCSVWRNITKDPTMWRTIDMH- 68
K SG +W +L R+ IF +L + V W N DPT+ D+
Sbjct: 9 KVEMGSGLYPDWSELTRECLLDIFSRLSQEQRWIGPMLVSKNWMNACYDPTLNTIFDLET 68
Query: 69 ---------NLGDSRY--NLDTICRRAIDYSSGHLLDINIEYFGTDDLLDYITDSTSHLR 117
N + +D+ R +D S G L +I I + T+ L Y + +L
Sbjct: 69 RFLSFPESINWWTPEFEDKVDSFLRSVVDRSEGGLTEIRIRHC-TERSLSYAAERCPNLE 127
Query: 118 RLRLACCYSISDEGLSEIAKKFPQXXXX-XXXXXXXXKEPLEVIGRSCPRLKTLKFNMEG 176
L + C +++D + +IA P E L +GRSC LK LK N+
Sbjct: 128 VLWIKNCPNVTDASMEKIAMNCPNLRELDISYSYGITHESLITLGRSCQNLKILKRNLLP 187
Query: 177 YRRPHIES---------------DEEAFAVAETMPELRHLQLFGNKLTNDGLLAILDGCP 221
P + + + EA + + M +L+HL++ + LT GL ++ GC
Sbjct: 188 RLGPSLPTIVAPLDYLATFPRYGNIEARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCS 247
Query: 222 HLETLDLRQCFNV 234
+LE +DLR C ++
Sbjct: 248 NLEYMDLRGCISL 260
>AT3G48880.2 | Symbols: | RNI-like superfamily protein |
chr3:18127873-18129008 FORWARD LENGTH=309
Length = 309
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 95/246 (38%), Gaps = 31/246 (12%)
Query: 14 DSGEERNWLDLPRDVASTIFLKLGAIEILTTVQRVCSVWRNITKDPTMWRTIDMHNLGDS 73
+S R W +L D+ IF K E+ + + VC WR DP +W+T+D+ N+ S
Sbjct: 6 ESRRLRRWEELDTDILVRIFQKFSVFELTSGLAHVCRGWRAACCDPILWKTVDLSNMRSS 65
Query: 74 RYN----------------LDTICRRAIDYSSG--HLLDINIEYFGTDDLLDYITDSTSH 115
L I + +++ S G L + F +DD L Y +
Sbjct: 66 FIKIPLEPYVYVERRSDEALTRILKLSMNLSGGSTRTLIFHFNLFLSDDQLTYTAERCPG 125
Query: 116 LRRLRLACCYSISDEGLSEIAKKFPQXXXXXXXXXXXXKEPLEVIGRSCPRLKTLKFNME 175
LRR+ L I G+ + + + L I ++C K LK
Sbjct: 126 LRRVVLPAWNRIKKTGICKAIRIWKDLESLTMPSIANPPYLLTEIAKNCKNFKELK---- 181
Query: 176 GYRRPHIESDEEAF---AVAETMPELRHLQLFGNKLTNDGLLAILDGCPHLETLDLRQCF 232
I E F + +P ++ L + + + + L+ ILDG P LE L++
Sbjct: 182 ------IMGPFEVFFANTLITCLPNIKTLSIRCSAIKREALMKILDGLPSLEVLNISHSH 235
Query: 233 NVNLAG 238
V +G
Sbjct: 236 LVEYSG 241
>AT3G48880.1 | Symbols: | RNI-like superfamily protein |
chr3:18127873-18129008 FORWARD LENGTH=309
Length = 309
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 95/246 (38%), Gaps = 31/246 (12%)
Query: 14 DSGEERNWLDLPRDVASTIFLKLGAIEILTTVQRVCSVWRNITKDPTMWRTIDMHNLGDS 73
+S R W +L D+ IF K E+ + + VC WR DP +W+T+D+ N+ S
Sbjct: 6 ESRRLRRWEELDTDILVRIFQKFSVFELTSGLAHVCRGWRAACCDPILWKTVDLSNMRSS 65
Query: 74 RYN----------------LDTICRRAIDYSSG--HLLDINIEYFGTDDLLDYITDSTSH 115
L I + +++ S G L + F +DD L Y +
Sbjct: 66 FIKIPLEPYVYVERRSDEALTRILKLSMNLSGGSTRTLIFHFNLFLSDDQLTYTAERCPG 125
Query: 116 LRRLRLACCYSISDEGLSEIAKKFPQXXXXXXXXXXXXKEPLEVIGRSCPRLKTLKFNME 175
LRR+ L I G+ + + + L I ++C K LK
Sbjct: 126 LRRVVLPAWNRIKKTGICKAIRIWKDLESLTMPSIANPPYLLTEIAKNCKNFKELK---- 181
Query: 176 GYRRPHIESDEEAF---AVAETMPELRHLQLFGNKLTNDGLLAILDGCPHLETLDLRQCF 232
I E F + +P ++ L + + + + L+ ILDG P LE L++
Sbjct: 182 ------IMGPFEVFFANTLITCLPNIKTLSIRCSAIKREALMKILDGLPSLEVLNISHSH 235
Query: 233 NVNLAG 238
V +G
Sbjct: 236 LVEYSG 241
>AT5G23340.1 | Symbols: | RNI-like superfamily protein |
chr5:7856314-7857983 FORWARD LENGTH=405
Length = 405
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 102 TDDLLDYITDSTSHLRRLRLACCYSISDEGLSEIAKKFPQXXXXXXXXXXXXKEP-LEVI 160
TD L I++ LR L L C I+D GL+ I + + L +
Sbjct: 86 TDSDLAVISEGFKFLRVLNLHNCKGITDTGLASIGRCLSLLQFLDVSYCRKLSDKGLSAV 145
Query: 161 GRSCPRLKTLKFNMEGYRRPHIESDEEAFAVAETMPELRHLQLFG-NKLTNDGLLAILDG 219
C L+ L ++ G R +DE +++E +L L L G +T+ GL ++ G
Sbjct: 146 AEGCHDLRAL--HLAGCR---FITDESLKSLSERCRDLEALGLQGCTNITDSGLADLVKG 200
Query: 220 CPHLETLDLRQCFNVNLAG--SLGKRCAEQIKDLRL 253
C +++LD+ +C NV AG S+ K CA +K L+L
Sbjct: 201 CRKIKSLDINKCSNVGDAGVSSVAKACASSLKTLKL 236
>AT4G03635.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: RNI-like superfamily protein (TAIR:AT4G05470.1); Has
118 Blast hits to 113 proteins in 8 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 118;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr4:1612035-1612613 FORWARD LENGTH=88
Length = 88
Score = 51.6 bits (122), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 99 YFGTDDLLDYITDSTSHLRRLRLACCYSISDEGLSEIAKKFPQXXXXXXXXXXXXKEPLE 158
+FG D L YI +S+LR LRLA CY ++ G K + L+
Sbjct: 3 HFGNDSLYSYIAQRSSNLRCLRLAMCYPLTGNGFVSAVMKL-SFLEELDISQGYTQLDLK 61
Query: 159 VIGRSCPRLKTLKFNMEGYRR 179
IG SCP LKT K N + R
Sbjct: 62 AIGHSCPLLKTFKLNRPSFSR 82
>AT4G11580.1 | Symbols: | RNI-like superfamily protein |
chr4:7006648-7007738 REVERSE LENGTH=333
Length = 333
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 9 SKALADSGEERNWLDLPRDVASTIFLKLGAIEILTTVQRVCSVWRNITKDPTMWRTIDMH 68
+K + SGE W DL +D+ IF KL ++I RVC W + + T+W T+D+
Sbjct: 2 TKVESTSGEVSEWADLNKDILELIFNKLDVMDITMGASRVCISWFLASHNKTLWNTVDLT 61
Query: 69 NLGD 72
NL +
Sbjct: 62 NLQE 65
>AT5G27920.1 | Symbols: | F-box family protein |
chr5:9942063-9944507 REVERSE LENGTH=642
Length = 642
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 9/148 (6%)
Query: 93 LDINIEYFGTDDLLDYITDSTSHLRRLRLACCYSISDEGLSEIAKKFPQXXXX-XXXXXX 151
LD+ Y D L+YI+ S+L+RL+L C +ISD+G+ I K +
Sbjct: 408 LDLTDCYGVNDRGLEYIS-KCSNLQRLKLGLCTNISDKGIFHIGSKCSKLLELDLYRCAG 466
Query: 152 XXKEPLEVIGRSCPRLKTLKFNMEGYRRPHIESDEEAFAVAETMPELRHLQLFGNK-LTN 210
+ L + R C L L + E + + L HL+L G K +T
Sbjct: 467 FGDDGLAALSRGCKSLNRLILSY------CCELTDTGVEQIRQLELLSHLELRGLKNITG 520
Query: 211 DGLLAILDGCPHLETLDLRQCFNVNLAG 238
GL AI GC L LD++ C N++ +G
Sbjct: 521 VGLAAIASGCKKLGYLDVKLCENIDDSG 548