Miyakogusa Predicted Gene
- Lj6g3v1946410.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1946410.1 Non Chatacterized Hit- tr|H9V7M0|H9V7M0_PINTA
Uncharacterized protein (Fragment) OS=Pinus taeda GN=C,63.01,5e-18,no
description,NULL; F-box domain,F-box domain, cyclin-like;
F-box-like,NULL; seg,NULL; FAMILY NOT N,CUFF.60253.1
(384 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G46170.1 | Symbols: | F-box family protein | chr5:18715638-1... 509 e-144
AT4G18380.2 | Symbols: | F-box family protein | chr4:10157957-1... 479 e-135
AT4G18380.1 | Symbols: | F-box family protein | chr4:10157957-1... 479 e-135
AT1G30200.1 | Symbols: | F-box family protein | chr1:10625147-1... 462 e-130
AT1G30200.2 | Symbols: | F-box family protein | chr1:10625147-1... 462 e-130
AT1G78100.1 | Symbols: | F-box family protein | chr1:29387907-2... 187 8e-48
AT1G22220.1 | Symbols: | F-box family protein | chr1:7846694-78... 186 3e-47
>AT5G46170.1 | Symbols: | F-box family protein |
chr5:18715638-18716825 REVERSE LENGTH=395
Length = 395
Score = 509 bits (1310), Expect = e-144, Method: Compositional matrix adjust.
Identities = 276/395 (69%), Positives = 303/395 (76%), Gaps = 30/395 (7%)
Query: 8 QIYPDPDAXXXXXXXXXDHFDRLPDSLLLLVFNKIADVKALGRCCVVSRRFHTLVPQVEN 67
+I+P+P DHFD LPDS+LLLVFNKI DVKALGRCCVVSRRFH+LVPQV+N
Sbjct: 13 RIHPEP-----PQTLEIDHFDHLPDSILLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDN 67
Query: 68 VVVRVDCVIXXXXXXXXXXXXXKSRGPFWN---LLRLVFGGIAKPIQTLGQFLGPKRAXX 124
VVVRVDCVI +S + + RLV GGI KP+Q LGQFLG KR+
Sbjct: 68 VVVRVDCVISDDDSSSLSSIKSRSGSSAGSFSAIFRLVVGGIVKPLQALGQFLGTKRSSS 127
Query: 125 XXXXXPLAVGS-----EDDG----DGGVTHHSPTQVLKNFNEIRLLRIELPSGELGIEHG 175
+ S +DDG GGVTHHSPTQVLKNF+EIR LRIELPSGELGI+ G
Sbjct: 128 SCGGSGSSSSSLSISGDDDGGEIEQGGVTHHSPTQVLKNFDEIRYLRIELPSGELGIDDG 187
Query: 176 VLLKWRADYGSTLDNCVILGASSVSHP------KSQDGNRVDAAAASCGSDDNGSIPDSF 229
VLLKWRA++GSTLDNCVILGASSV P ++ D V A S GSDDNGSIP+SF
Sbjct: 188 VLLKWRAEFGSTLDNCVILGASSVIPPNPMRVSQACDTTTVVEAPGS-GSDDNGSIPESF 246
Query: 230 YTNGGLKLRVVWTISSLIAASARHYLLQPIISEHRTLDHLVLTDADGQGVLYMNRDQLEE 289
YTNGGLKLRVVWTISSLIAASARHYLLQPII+EH+TLD LVLTD+DGQGVL MNRDQLEE
Sbjct: 247 YTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDSDGQGVLCMNRDQLEE 306
Query: 290 LRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGVVLKGATLVAIRPSEQSPATSAKKE 349
LRVKPL+ASSASKRTLVPALNMRLWYAP LELPDG VLKGATLVAIRPSE +KKE
Sbjct: 307 LRVKPLAASSASKRTLVPALNMRLWYAPTLELPDGTVLKGATLVAIRPSE------SKKE 360
Query: 350 ASDLSWVSTAFEEPYRTAATMLVKRRTYCLEMNSF 384
SD+SWVS+AFEEPY TAA MLVKRRTYCLEMNSF
Sbjct: 361 VSDISWVSSAFEEPYETAAKMLVKRRTYCLEMNSF 395
>AT4G18380.2 | Symbols: | F-box family protein |
chr4:10157957-10159099 FORWARD LENGTH=380
Length = 380
Score = 479 bits (1233), Expect = e-135, Method: Compositional matrix adjust.
Identities = 258/388 (66%), Positives = 290/388 (74%), Gaps = 32/388 (8%)
Query: 8 QIYPDPDAXXXXXXXXXDHFDRLPDSLLLLVFNKIADVKALGRCCVVSRRFHTLVPQVEN 67
+I+P+P DHFD LPDS+LLL+FN I DVKALGRC VVS+RFH+L+PQVEN
Sbjct: 14 RIHPEPQEI--------DHFDNLPDSILLLIFNNIGDVKALGRCSVVSKRFHSLIPQVEN 65
Query: 68 VVVRVDCVIXXXXXXXXXXXXXKSRGPFWN---LLRLVFGGIAKPIQTLGQFLGPKRAXX 124
V VRVDCVI +S + RLVF KP+Q LGQFL KR+
Sbjct: 66 VFVRVDCVISDDDSSSLLSDKPRSASAASPFSAIFRLVF----KPLQALGQFL--KRSGS 119
Query: 125 XXXXXPLAVGSE-----DDGD---GGVTHHSPTQVLKNFNEIRLLRIELPSGELGIEHGV 176
+ S DDG+ GGVTHHSPTQVLKNF+EI+ L+IELPSGELGI+ GV
Sbjct: 120 SSLPSGSSPSSLLISGGDDGEIEQGGVTHHSPTQVLKNFDEIKFLKIELPSGELGIDDGV 179
Query: 177 LLKWRADYGSTLDNCVILGASSVSHPKSQDGNRVDAAAASCGSDDNGSIPDSFYTNGGLK 236
LLKWRA++GSTL+NCVILGASSV P + D +A + +DNGSIP+SFYTNGGLK
Sbjct: 180 LLKWRAEFGSTLENCVILGASSVIPPTNSDKTEASSAPVA-AVEDNGSIPESFYTNGGLK 238
Query: 237 LRVVWTISSLIAASARHYLLQPIISEHRTLDHLVLTDADGQGVLYMNRDQLEELRVKPLS 296
LRVVWTISSLIAASARHYLLQPII+EH+TLD LVLTD DGQGVL MNRDQLEELRVKPLS
Sbjct: 239 LRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDVDGQGVLCMNRDQLEELRVKPLS 298
Query: 297 ASSASKRTLVPALNMRLWYAPHLELPDGVVLKGATLVAIRPSEQSPATSAKKEASDLSWV 356
ASSASKRTLVPALNMRLWYAP LELPDG VLKGATLVAIRPSE +KKE D+SWV
Sbjct: 299 ASSASKRTLVPALNMRLWYAPSLELPDGTVLKGATLVAIRPSE------SKKEVCDVSWV 352
Query: 357 STAFEEPYRTAATMLVKRRTYCLEMNSF 384
S+AF+EPY AA MLVKRRTYCLEMNSF
Sbjct: 353 SSAFDEPYGVAAKMLVKRRTYCLEMNSF 380
>AT4G18380.1 | Symbols: | F-box family protein |
chr4:10157957-10159099 FORWARD LENGTH=380
Length = 380
Score = 479 bits (1233), Expect = e-135, Method: Compositional matrix adjust.
Identities = 258/388 (66%), Positives = 290/388 (74%), Gaps = 32/388 (8%)
Query: 8 QIYPDPDAXXXXXXXXXDHFDRLPDSLLLLVFNKIADVKALGRCCVVSRRFHTLVPQVEN 67
+I+P+P DHFD LPDS+LLL+FN I DVKALGRC VVS+RFH+L+PQVEN
Sbjct: 14 RIHPEPQEI--------DHFDNLPDSILLLIFNNIGDVKALGRCSVVSKRFHSLIPQVEN 65
Query: 68 VVVRVDCVIXXXXXXXXXXXXXKSRGPFWN---LLRLVFGGIAKPIQTLGQFLGPKRAXX 124
V VRVDCVI +S + RLVF KP+Q LGQFL KR+
Sbjct: 66 VFVRVDCVISDDDSSSLLSDKPRSASAASPFSAIFRLVF----KPLQALGQFL--KRSGS 119
Query: 125 XXXXXPLAVGSE-----DDGD---GGVTHHSPTQVLKNFNEIRLLRIELPSGELGIEHGV 176
+ S DDG+ GGVTHHSPTQVLKNF+EI+ L+IELPSGELGI+ GV
Sbjct: 120 SSLPSGSSPSSLLISGGDDGEIEQGGVTHHSPTQVLKNFDEIKFLKIELPSGELGIDDGV 179
Query: 177 LLKWRADYGSTLDNCVILGASSVSHPKSQDGNRVDAAAASCGSDDNGSIPDSFYTNGGLK 236
LLKWRA++GSTL+NCVILGASSV P + D +A + +DNGSIP+SFYTNGGLK
Sbjct: 180 LLKWRAEFGSTLENCVILGASSVIPPTNSDKTEASSAPVA-AVEDNGSIPESFYTNGGLK 238
Query: 237 LRVVWTISSLIAASARHYLLQPIISEHRTLDHLVLTDADGQGVLYMNRDQLEELRVKPLS 296
LRVVWTISSLIAASARHYLLQPII+EH+TLD LVLTD DGQGVL MNRDQLEELRVKPLS
Sbjct: 239 LRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDVDGQGVLCMNRDQLEELRVKPLS 298
Query: 297 ASSASKRTLVPALNMRLWYAPHLELPDGVVLKGATLVAIRPSEQSPATSAKKEASDLSWV 356
ASSASKRTLVPALNMRLWYAP LELPDG VLKGATLVAIRPSE +KKE D+SWV
Sbjct: 299 ASSASKRTLVPALNMRLWYAPSLELPDGTVLKGATLVAIRPSE------SKKEVCDVSWV 352
Query: 357 STAFEEPYRTAATMLVKRRTYCLEMNSF 384
S+AF+EPY AA MLVKRRTYCLEMNSF
Sbjct: 353 SSAFDEPYGVAAKMLVKRRTYCLEMNSF 380
>AT1G30200.1 | Symbols: | F-box family protein |
chr1:10625147-10626286 FORWARD LENGTH=379
Length = 379
Score = 462 bits (1189), Expect = e-130, Method: Compositional matrix adjust.
Identities = 259/398 (65%), Positives = 291/398 (73%), Gaps = 40/398 (10%)
Query: 4 LRAD---QIYPDPDAXXXXXXXXXDHFDRLPDSLLLLVFNKIADVKALGRCCVVSRRFHT 60
LR+D +I+P+P + DHFD LPDSLLLL+F+K+ADVK LGRCC+VSRRFH+
Sbjct: 5 LRSDPVSRIHPEPQSLTSF-----DHFDLLPDSLLLLIFDKVADVKDLGRCCIVSRRFHS 59
Query: 61 LVPQVENVVVRVDCVIXXXXXXXXXXXXXKSR------------GPFWNLLRLVFGGIAK 108
LVP VENV+VRVDCVI S G F L RLVF I K
Sbjct: 60 LVPFVENVLVRVDCVISDDDSSSSDENHRFSLNTASISDAGGAGGSFSALFRLVFAPIFK 119
Query: 109 PIQTLGQFLGPKRAXXXXXXXPLAVGSEDDGDGGVTHHSPTQVLKNFNEIRLLRIELPSG 168
P Q LGQ LGPKR+ A+ E GVTHHSPTQVLKNF EIR L+IELP+G
Sbjct: 120 PFQMLGQILGPKRSSSSFDASFSAINDEI----GVTHHSPTQVLKNFGEIRFLKIELPTG 175
Query: 169 ELGIEHGVLLKWRADYGSTLDNCVILGASSV--SHPKSQDGNRVDAAAASCGSDDNGSIP 226
ELGIE G+LLKWRAD+GSTLDNC+ILGASSV S+ N VD +DNG+IP
Sbjct: 176 ELGIEDGILLKWRADFGSTLDNCMILGASSVIQSNSVKNHENSVD--------EDNGNIP 227
Query: 227 DSFYTNGGLKLRVVWTISSLIAASARHYLLQPIISEHRTLDHLVLTDADGQGVLYMNRDQ 286
+SFYTNGGLKLRVVWTISSLIAASARHYLLQPII+EH++LD LVL+DADGQGVL MNR+Q
Sbjct: 228 ESFYTNGGLKLRVVWTISSLIAASARHYLLQPIINEHKSLDRLVLSDADGQGVLCMNREQ 287
Query: 287 LEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGVVLKGATLVAIRPSEQSPATSA 346
LEELRV PLSASSASKRTLVPALNMRLWYAP L+LPDG VLKGATLVAIRPSE +
Sbjct: 288 LEELRVTPLSASSASKRTLVPALNMRLWYAPELDLPDGTVLKGATLVAIRPSE------S 341
Query: 347 KKEASDLSWVSTAFEEPYRTAATMLVKRRTYCLEMNSF 384
KKE D SW+S AFEEP+ T A ML+KRRTYCLEMNSF
Sbjct: 342 KKEVCDASWLSDAFEEPFGTVAKMLIKRRTYCLEMNSF 379
>AT1G30200.2 | Symbols: | F-box family protein |
chr1:10625147-10626286 FORWARD LENGTH=379
Length = 379
Score = 462 bits (1189), Expect = e-130, Method: Compositional matrix adjust.
Identities = 259/398 (65%), Positives = 291/398 (73%), Gaps = 40/398 (10%)
Query: 4 LRAD---QIYPDPDAXXXXXXXXXDHFDRLPDSLLLLVFNKIADVKALGRCCVVSRRFHT 60
LR+D +I+P+P + DHFD LPDSLLLL+F+K+ADVK LGRCC+VSRRFH+
Sbjct: 5 LRSDPVSRIHPEPQSLTSF-----DHFDLLPDSLLLLIFDKVADVKDLGRCCIVSRRFHS 59
Query: 61 LVPQVENVVVRVDCVIXXXXXXXXXXXXXKSR------------GPFWNLLRLVFGGIAK 108
LVP VENV+VRVDCVI S G F L RLVF I K
Sbjct: 60 LVPFVENVLVRVDCVISDDDSSSSDENHRFSLNTASISDAGGAGGSFSALFRLVFAPIFK 119
Query: 109 PIQTLGQFLGPKRAXXXXXXXPLAVGSEDDGDGGVTHHSPTQVLKNFNEIRLLRIELPSG 168
P Q LGQ LGPKR+ A+ E GVTHHSPTQVLKNF EIR L+IELP+G
Sbjct: 120 PFQMLGQILGPKRSSSSFDASFSAINDEI----GVTHHSPTQVLKNFGEIRFLKIELPTG 175
Query: 169 ELGIEHGVLLKWRADYGSTLDNCVILGASSV--SHPKSQDGNRVDAAAASCGSDDNGSIP 226
ELGIE G+LLKWRAD+GSTLDNC+ILGASSV S+ N VD +DNG+IP
Sbjct: 176 ELGIEDGILLKWRADFGSTLDNCMILGASSVIQSNSVKNHENSVD--------EDNGNIP 227
Query: 227 DSFYTNGGLKLRVVWTISSLIAASARHYLLQPIISEHRTLDHLVLTDADGQGVLYMNRDQ 286
+SFYTNGGLKLRVVWTISSLIAASARHYLLQPII+EH++LD LVL+DADGQGVL MNR+Q
Sbjct: 228 ESFYTNGGLKLRVVWTISSLIAASARHYLLQPIINEHKSLDRLVLSDADGQGVLCMNREQ 287
Query: 287 LEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGVVLKGATLVAIRPSEQSPATSA 346
LEELRV PLSASSASKRTLVPALNMRLWYAP L+LPDG VLKGATLVAIRPSE +
Sbjct: 288 LEELRVTPLSASSASKRTLVPALNMRLWYAPELDLPDGTVLKGATLVAIRPSE------S 341
Query: 347 KKEASDLSWVSTAFEEPYRTAATMLVKRRTYCLEMNSF 384
KKE D SW+S AFEEP+ T A ML+KRRTYCLEMNSF
Sbjct: 342 KKEVCDASWLSDAFEEPFGTVAKMLIKRRTYCLEMNSF 379
>AT1G78100.1 | Symbols: | F-box family protein |
chr1:29387907-29388911 FORWARD LENGTH=334
Length = 334
Score = 187 bits (476), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 117/373 (31%), Positives = 190/373 (50%), Gaps = 53/373 (14%)
Query: 25 DHFDRLPDSLLLLVFNKIADVKALGRCCVVSRRFHTLVPQVENVVVRVDCVIXXXXXXXX 84
D FD +PD +++ + N++ DVK L RC VS+RF++L Q E++++++D ++
Sbjct: 2 DAFDAIPDPVVIDILNRVGDVKTLIRCRSVSKRFNSLATQSESLLLQLDQILGATESDSE 61
Query: 85 XXXXXKSRGPFWNLLRLVFG---GIAKPIQTLGQFLGPKRAXXXXXXXPLAVGSEDDGDG 141
P + R +F G+ PI F P + P
Sbjct: 62 ID------SPIASFFRSLFKSIHGLLPPI-----FSKPANSDEILTRSP----------- 99
Query: 142 GVTHHSPTQVLKNFNEIRLLRIELPSGELGIEHGVLLKWRADYGSTLDNCVILGASSVSH 201
+P Q+L F IR L +EL G++ +E G +KW+A++G TL +CVI+ S +
Sbjct: 100 ----KTPAQILSGFERIRNLEVELYGGDVKLEKGAAVKWKAEFGKTLKSCVIVAFRSATV 155
Query: 202 PKSQDGNRVDAAAASCGSDDNGSIPDSFYTNGGLKLRVVWTISSLIAASARHYLLQPIIS 261
S AA + +G + GLK RVVWTIS+L+AAS RHYL++ ++
Sbjct: 156 NTS--------AATEAAAVVDGVVESDSEFVCGLKTRVVWTISALMAASTRHYLMRDLVK 207
Query: 262 EHRTLDHLVLTDADGQGVLYMNRDQLEELRVKPL-----SASSASKRTLVPALNMRLWYA 316
+H+ ++ L++ D+DG+G + M+ ++E R + + +RT+VP++ M + +A
Sbjct: 208 DHKEMEKLIVRDSDGEGTVVMDAAGMKEYRETEVRGDNKESERVGERTVVPSVRMSMRHA 267
Query: 317 PHLELPDGVVLKGATLVAIRPSEQSPATSAKKEASDLSWVSTAF-----EEPYRTAATML 371
P L L G+ L+ ATLV +RP T + +D+ V+ AF + Y A T L
Sbjct: 268 PSLMLKSGICLEAATLVVVRP------TGVASDDNDVELVTEAFAGDGDDCMYGEAVTAL 321
Query: 372 VKRRTYCLEMNSF 384
+KRR LEMNSF
Sbjct: 322 LKRRRNVLEMNSF 334
>AT1G22220.1 | Symbols: | F-box family protein |
chr1:7846694-7847638 FORWARD LENGTH=314
Length = 314
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 121/369 (32%), Positives = 194/369 (52%), Gaps = 65/369 (17%)
Query: 25 DHFDRLPDSLLLLVFNKIADVKALGRCCVVSRRFHTLVPQVENVVVRVDCVIXXXXXXXX 84
D FD LPD +++ + NK+ DVK L RC +S+RF++LVPQ E++ +R+D +
Sbjct: 2 DVFDGLPDPIIVDILNKVGDVKTLLRCSSLSKRFNSLVPQSESLTLRLDHSV-------- 53
Query: 85 XXXXXKSRGPF-WNLLRLVFGGIAKPIQTLGQFLGPKRAXXXXXXXPLAVGSEDDGDGGV 143
S P ++ R +F G+ + + P+ + + +
Sbjct: 54 ------SDSPVVTSIFRSLFNGLVSLLSKPAK--------------PITITT-------L 86
Query: 144 THHSPTQVLKNFNEIRLLRIELPSGELGIEHGVLLKWRADYGSTLDNCVILG---ASSVS 200
+ P ++L F+ IR L +ELP G++ +E G +KW+A++G TL +CVI+ A +VS
Sbjct: 87 SPSLPFKILSRFDRIRNLDVELPGGDVKLEKGAAVKWKAEFGKTLKSCVIVAFRSAGTVS 146
Query: 201 HPKSQDGNRVDAAAASCGSDDNGSIPDSFYTNGGLKLRVVWTISSLIAASARHYLLQPII 260
P + +G DA F T GLK RVVWTIS+L+AAS+RHYL++ ++
Sbjct: 147 SPVAVEGES-DA---------------EFVT--GLKTRVVWTISALMAASSRHYLMREVV 188
Query: 261 SEHRTLDHLVLTDADGQGVLYMNRDQLEEL-----RVKPLSASSASKRTLVPALNMRLWY 315
EH ++ LV+ D + +G + MN + L+EL RV+ +KR++VP++ M + +
Sbjct: 189 KEHEEIESLVMRDKEREGTVVMNEEGLKELRNTEARVEDEERVVKNKRSVVPSVRMSMRH 248
Query: 316 APHLELPDGVVLKGATLVAIRPSEQSPATSAKKEASDLSWVSTAFEEPYRTAATMLVKRR 375
AP L+L G+ L+ ATLV +RPS E + ++V Y A L+K +
Sbjct: 249 APSLKLKSGICLESATLVIVRPSGADFEVGDDAELATEAFVGDCM---YGEAVVALLKCK 305
Query: 376 TYCLEMNSF 384
LEMNSF
Sbjct: 306 KNALEMNSF 314