Miyakogusa Predicted Gene

Lj6g3v1946380.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1946380.1 Non Chatacterized Hit- tr|D8QXH8|D8QXH8_SELML
Putative uncharacterized protein OS=Selaginella
moelle,52.81,3e-19,SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,NULL;
LSM,Ribonucleoprotein LSM domain; no description,NUL,CUFF.60256.1
         (111 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G18372.1 | Symbols:  | Small nuclear ribonucleoprotein family...   145   5e-36

>AT4G18372.1 | Symbols:  | Small nuclear ribonucleoprotein family
           protein | chr4:10151349-10151687 REVERSE LENGTH=112
          Length = 112

 Score =  145 bits (366), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 67/78 (85%), Positives = 72/78 (92%)

Query: 33  MLVGIKDGRFFLGGFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPSSCRAT 92
           MLVGIKDGRFFLG F+CIDKQGNIILQD VEYRS RRSSPSP EQRCLG+ILIPSSCR +
Sbjct: 35  MLVGIKDGRFFLGNFHCIDKQGNIILQDTVEYRSIRRSSPSPTEQRCLGMILIPSSCRTS 94

Query: 93  CHVDCSIDEQLSLLSLRE 110
           CHVDCSIDEQLSL+ L+E
Sbjct: 95  CHVDCSIDEQLSLIQLKE 112