Miyakogusa Predicted Gene

Lj6g3v1933970.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1933970.1 Non Chatacterized Hit- tr|I1HGD7|I1HGD7_BRADI
Uncharacterized protein OS=Brachypodium distachyon GN=,60.87,2e-19,60S
RIBOSOMAL PROTEIN L18A-RELATED,NULL; 60S RIBOSOMAL PROTEIN
L18A,Ribosomal protein L18a;
seg,NULL,NODE_41726_length_683_cov_7.893118.path2.1
         (152 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G17080.1 | Symbols:  | Ribosomal protein L18ae family | chr1:...    68   3e-12
AT1G53560.1 | Symbols:  | Ribosomal protein L18ae family | chr1:...    62   2e-10
AT1G29970.1 | Symbols: RPL18AA | 60S ribosomal protein L18A-1 | ...    55   2e-08
AT1G29970.3 | Symbols:  | 60S ribosomal protein L18A-1 | chr1:10...    52   1e-07

>AT1G17080.1 | Symbols:  | Ribosomal protein L18ae family |
           chr1:5840458-5841536 REVERSE LENGTH=154
          Length = 154

 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 65/144 (45%), Gaps = 10/144 (6%)

Query: 11  EEGTNRGIATD----HHYYGTFQGVXX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXX 62
           EE  ++G A++    HH YGTFQGV                                   
Sbjct: 5   EEDKSKGFASEEGNQHHQYGTFQGVSNYPPPQNSAPVTGFPQPSAPPGVYDSGAPYYAHG 64

Query: 63  XHALPVYA-VAEGRPVRERRXXXXXXXXXXXXXXXXXXXXXXPWYIGAFLLLC-VQMDYR 120
              +PV+  VAEGRPVR+RR                      PWY+G F+++   ++DYR
Sbjct: 65  YQTVPVHGGVAEGRPVRQRRLPCCGIGLGWFLFIVGFFLGAIPWYVGLFIMMFGRRIDYR 124

Query: 121 EKPGLIACAVGSLVAVIAVTLGVA 144
           EKPG IAC + +++A IAV LGV+
Sbjct: 125 EKPGYIACTIAAILATIAVILGVS 148


>AT1G53560.1 | Symbols:  | Ribosomal protein L18ae family |
           chr1:19984908-19985960 REVERSE LENGTH=153
          Length = 153

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 40/75 (53%)

Query: 69  YAVAEGRPVRERRXXXXXXXXXXXXXXXXXXXXXXPWYIGAFLLLCVQMDYREKPGLIAC 128
           Y V++GRP R+ R                      PWY+G F+L+C ++D REKPG +AC
Sbjct: 71  YPVSQGRPARQNRLPCCGLGLGWFLFIIGFLLGAIPWYVGVFILVCARIDPREKPGYVAC 130

Query: 129 AVGSLVAVIAVTLGV 143
            + ++VA I +  GV
Sbjct: 131 TIAAVVATITIVFGV 145


>AT1G29970.1 | Symbols: RPL18AA | 60S ribosomal protein L18A-1 |
           chr1:10499952-10501311 REVERSE LENGTH=158
          Length = 158

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 41/79 (51%)

Query: 66  LPVYAVAEGRPVRERRXXXXXXXXXXXXXXXXXXXXXXPWYIGAFLLLCVQMDYREKPGL 125
           +P Y V E RP+ E                        PWY+GAF++L   +D+REK G 
Sbjct: 74  VPDYTVVEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGY 133

Query: 126 IACAVGSLVAVIAVTLGVA 144
           +AC++ S+V +IAV LG+ 
Sbjct: 134 VACSIASVVYLIAVMLGMT 152


>AT1G29970.3 | Symbols:  | 60S ribosomal protein L18A-1 |
           chr1:10499952-10501311 REVERSE LENGTH=200
          Length = 200

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 32/41 (78%)

Query: 104 PWYIGAFLLLCVQMDYREKPGLIACAVGSLVAVIAVTLGVA 144
           PWY+GAF++L   +D+REK G +AC++ S+V +IAV LG+ 
Sbjct: 154 PWYLGAFIVLVTSVDHREKAGYVACSIASVVYLIAVMLGMT 194