Miyakogusa Predicted Gene

Lj6g3v1918200.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1918200.1 tr|G7LE23|G7LE23_MEDTR 30S ribosomal protein S5
OS=Medicago truncatula GN=MTR_8g093680 PE=3 SV=1,78.93,0,seg,NULL; 30S
RIBOSOMAL PROTEIN S5,NULL; RIBOSOMAL S SUBUNIT,Ribosomal protein S5;
Ribosomal protein,CUFF.60181.1
         (500 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64880.1 | Symbols:  | Ribosomal protein S5 family protein | ...   494   e-140
AT2G33800.1 | Symbols:  | Ribosomal protein S5 family protein | ...    88   1e-17

>AT1G64880.1 | Symbols:  | Ribosomal protein S5 family protein |
           chr1:24105713-24108780 FORWARD LENGTH=515
          Length = 515

 Score =  494 bits (1273), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 260/465 (55%), Positives = 326/465 (70%), Gaps = 13/465 (2%)

Query: 40  SWYYSPFARKTLYSTSSDARIVQDLLAQVEKDRLREKNERMRAGLDTADIDAECEEDYMG 99
           S  Y  F+  T+  + +D R+V++L+A+VEK++ RE+ ER R GLD  DIDAE EEDY+G
Sbjct: 60  SQRYRFFSSSTMSPSEAD-RVVRELIAEVEKEKQREREERQRQGLDYKDIDAEDEEDYLG 118

Query: 100 VGPLIXXXXXXXXXXCPELMRXXXXXXXXXXXXXXXXXQXXXXXX--XXXXXXHQDLLKN 157
           + P I            EL R                 +              H++LL+ 
Sbjct: 119 IEPFIEKLKKQNLKDDGELNRREESSDSDSEYDEIDLDEERKKEDIFNKKFQRHKELLQT 178

Query: 158 FTDADTLDDAFKWMNRIDKFENKHFRLRPEYRVIGELINRLKVVTDQKDKFILQNKLNRA 217
            T ++TLD+AF+WMN++DKFE KHF+LRPEYRVIGEL+NRLKV  + K+KF+LQ KLNRA
Sbjct: 179 LTKSETLDEAFRWMNKLDKFEEKHFKLRPEYRVIGELMNRLKVA-EGKEKFVLQQKLNRA 237

Query: 218 LRLVQWKEAFDPDNPDNYGVIQHEQLGPTADALQHAGFEKEKQTIXX--XXXXXXXXXXX 275
           +RLV+WKEAFDP+NP NYGVI+        D +Q  G E+E++ +               
Sbjct: 238 MRLVEWKEAFDPNNPANYGVIER-------DNVQGGGEEREERLVADGPKDDNDDDDDEE 290

Query: 276 XXXXXXXXXNIILAKLDAIDXXXXXXXXXXXYTFGKKGKVLEEEIRDLAEERNELTEKKR 335
                    +I+L KL+AID           +TFGKKGK LEEEIR+LAE+RN LTEKKR
Sbjct: 291 EFDDMKERDDILLEKLNAIDKKLEIKLSELDHTFGKKGKRLEEEIRELAEDRNALTEKKR 350

Query: 336 RPLYRKGFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKA 395
           +PLYRKG+DV +I+V + CKVTKGG+V +YTA++ CGNY G++G+AKAK      A+QKA
Sbjct: 351 QPLYRKGYDVHVIDVKKVCKVTKGGRVERYTALMVCGNYEGIIGYAKAKAETGQSAMQKA 410

Query: 396 YEKCFQNLHFVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRIVQTILHLAGFKN 455
           YEKCFQNLH+VERHEEHTIAHAIQTSYKKTK+YLWPAPT TGMKAGR+V+TIL LAGFKN
Sbjct: 411 YEKCFQNLHYVERHEEHTIAHAIQTSYKKTKLYLWPAPTTTGMKAGRVVKTILLLAGFKN 470

Query: 456 VKSKVVGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVEKYLL 500
           +KSKV+GSRN +NTVKAV KALNA+ETP+DVQEKFGRTVVEKYLL
Sbjct: 471 IKSKVIGSRNSYNTVKAVLKALNAVETPKDVQEKFGRTVVEKYLL 515


>AT2G33800.1 | Symbols:  | Ribosomal protein S5 family protein |
           chr2:14300925-14302352 REVERSE LENGTH=303
          Length = 303

 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 82/159 (51%)

Query: 333 KKRRPLYRKGFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVAL 392
           K ++   R GF+ +++ V R  KV KGG+ +K+ A++  G+  G VG   AK   V  A+
Sbjct: 137 KPKKDKIRDGFEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAV 196

Query: 393 QKAYEKCFQNLHFVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRIVQTILHLAG 452
           QK+     +N+  V   +  T  H  +  Y   KV L PA   TG+ AG  V+ +L +AG
Sbjct: 197 QKSAIDARRNIVQVPMTKYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAG 256

Query: 453 FKNVKSKVVGSRNPHNTVKAVFKALNAIETPRDVQEKFG 491
            +N   K +GS N  N  +A   A+  +   RDV ++ G
Sbjct: 257 VENALGKQLGSNNALNNARATLAAVQQMRQFRDVAQERG 295