Miyakogusa Predicted Gene
- Lj6g3v1916080.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1916080.2 Non Chatacterized Hit- tr|I1MF85|I1MF85_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.36187 PE,84.02,0,The
RING-variant domain is a C4HC3 zinc-fing,Zinc finger, RING-CH-type;
RING/U-box,NULL; ZF_RING_CH,,CUFF.60179.2
(413 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G06330.1 | Symbols: | RING/U-box superfamily protein | chr3:... 325 3e-89
AT5G18760.1 | Symbols: | RING/U-box superfamily protein | chr5:... 287 9e-78
AT3G06330.3 | Symbols: | RING/U-box superfamily protein | chr3:... 247 1e-65
AT3G06330.2 | Symbols: | RING/U-box superfamily protein | chr3:... 244 7e-65
AT5G60580.3 | Symbols: | RING/U-box superfamily protein | chr5:... 172 4e-43
AT5G60580.1 | Symbols: | RING/U-box superfamily protein | chr5:... 172 4e-43
AT3G09760.1 | Symbols: | RING/U-box superfamily protein | chr3:... 171 8e-43
AT5G60580.4 | Symbols: | RING/U-box superfamily protein | chr5:... 166 2e-41
AT5G60580.2 | Symbols: | RING/U-box superfamily protein | chr5:... 166 2e-41
AT5G03180.2 | Symbols: | RING/U-box superfamily protein | chr5:... 158 7e-39
AT5G03180.1 | Symbols: | RING/U-box superfamily protein | chr5:... 158 7e-39
AT4G34100.1 | Symbols: | RING/U-box superfamily protein | chr4:... 54 2e-07
AT4G34100.2 | Symbols: | RING/U-box superfamily protein | chr4:... 54 2e-07
AT1G14260.2 | Symbols: | RING/FYVE/PHD zinc finger superfamily ... 54 2e-07
AT1G14260.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily ... 54 2e-07
AT5G05830.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily ... 53 3e-07
AT5G59000.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily ... 51 1e-06
AT5G08750.2 | Symbols: | RING/FYVE/PHD zinc finger superfamily ... 50 2e-06
AT5G08750.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily ... 50 2e-06
AT5G08750.3 | Symbols: | RING/FYVE/PHD zinc finger superfamily ... 50 2e-06
AT5G01070.2 | Symbols: | RING/FYVE/PHD zinc finger superfamily ... 49 5e-06
AT5G63780.1 | Symbols: SHA1 | RING/FYVE/PHD zinc finger superfam... 48 1e-05
>AT3G06330.1 | Symbols: | RING/U-box superfamily protein |
chr3:1917334-1919709 FORWARD LENGTH=426
Length = 426
Score = 325 bits (834), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 183/397 (46%), Positives = 228/397 (57%), Gaps = 13/397 (3%)
Query: 22 QLNKEDSDNRPSGKRPDISLQVPPRPAGFGTTSGGK-VLNHSQSFSKGN-SSPRGFLRAL 79
Q+ ++ +++ PS D+S+Q+P R FG K L + SF G SSPRG LR L
Sbjct: 30 QVTEKSTEDVPSCSHLDLSIQIPSRSLPFGNGRNPKGSLKSTPSFKSGTTSSPRGILRNL 89
Query: 80 SFKRKG-NVTDGERSSLLNPEPKTSADNPNMASISEVP-WSRCTSLPVTPATNLSPAVST 137
S K+K + + ERSSLL+P +A PN + P W RC SLP A LSP VST
Sbjct: 90 SLKKKVISQPESERSSLLSPGLMETAKKPNATGSTTSPYWKRCLSLPSRQAAKLSPVVST 149
Query: 138 PISATTYNEQIKPHKDVVRAKVSRSLSVPGRNVVIVRSVSFSTRXXXXXXXXXXXXXTPA 197
+SA + P+KD SRSLS+PGRN VIVRS+SF +
Sbjct: 150 QLSAGVPGD--PPNKDY-----SRSLSMPGRNKVIVRSISFDNHKARVSSETSADQVSSV 202
Query: 198 PVXXXXXXXXXXXXXVCRICFDVCDERNTFKMECSCKGDLTLVHEECLIKWFSLKGNKKC 257
VCRIC DVC+E NT KMECSCKGDL LVHE C +KWFS KG + C
Sbjct: 203 -PPEETDEEIPEEEAVCRICLDVCEEGNTLKMECSCKGDLRLVHEACAMKWFSTKGTRTC 261
Query: 258 DVCGQEVQNLPVTXXXXXXXXXXXXXXXXXXXXX-XESISAWQDFVVLVLISTICYFFFL 316
DVC Q VQNLPVT +++SAWQ+FVVLVLIST+CYFFFL
Sbjct: 262 DVCRQVVQNLPVTLVRVPTPNQQNNRRGSSQQNMPSQTVSAWQEFVVLVLISTVCYFFFL 321
Query: 317 EQLLLPDLKTQAIIIAGPFAFTXXXXXXXXXXXXXXKEYIWTYAALEFALVAITVHIFYS 376
EQLL+ DL QAI IA PF+ T +EYIWTYAALEFALV + VHIFY+
Sbjct: 322 EQLLIRDLNKQAIYIAAPFSLTLGLLASIFAIVLAIREYIWTYAALEFALVGMLVHIFYA 381
Query: 377 MFHLTAIYAILLSSVLGFGISMGINYLYIQYVTWRLQ 413
L+A Y+IL + +LGFGI++ +N LY+ Y WR++
Sbjct: 382 TVRLSATYSILFAGILGFGIAVCLNSLYLHYFAWRVR 418
>AT5G18760.1 | Symbols: | RING/U-box superfamily protein |
chr5:6258508-6260828 REVERSE LENGTH=411
Length = 411
Score = 287 bits (735), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 173/393 (44%), Positives = 222/393 (56%), Gaps = 29/393 (7%)
Query: 18 QADNQLNKEDSDNRPSGKRPDISLQVPPRPAGFGTTSGGKVLNHSQSFSKGNSSPRGFLR 77
Q Q ++ S ++PSG + D+S+Q+PP+P + G LR
Sbjct: 31 QVKEQSVEDVSRSQPSGSQLDVSIQIPPKP----------------------TPSLGILR 68
Query: 78 ALSFKRKGNVTDGERSSLLNPEPKTSADNPNMAS-ISEVPWSRCTSLPVTPATNLSPAVS 136
LS KRK ++ + ER LL+P +++ P +AS I+ W RC SLP + + LS VS
Sbjct: 69 NLSLKRKASLPNYERRLLLSPSVSETSEKPLVASPITSPYWKRCLSLPSSNSAKLSLVVS 128
Query: 137 T-PISATTYNEQIKPHKDVVRAKVSRSLSVPGRNVVIVRSVSFSTRXXXXXXXXXXXXXT 195
T P+SA ++EQ K +KD + A VSRSLS+ N VIVR+VSF T
Sbjct: 129 TTPVSAVVHSEQPKSNKDGLHASVSRSLSM---NRVIVRAVSFDDNKNHISNEANGDQIT 185
Query: 196 PAPVXXXXXXXXXXXXXVCRICFDVCDERNTFKMECSCKGDLTLVHEECLIKWFSLKGNK 255
P P VCRIC DVC+E NT KMECSCKGDL LVHE C IKWFS KG +
Sbjct: 186 PVPAEETEEEIPEEEA-VCRICLDVCEEGNTLKMECSCKGDLRLVHEHCAIKWFSTKGTR 244
Query: 256 KCDVCGQEVQNLPVTXXXXXXXXXXXXXXXXXXXXXX-ESISAWQDFVVLVLISTICYFF 314
CDVC QEV+NLPV +SIS Q+FVVLVLIST+CYFF
Sbjct: 245 ICDVCRQEVRNLPVILLRVPTINQLTNRRELTQQSSEPQSISVGQEFVVLVLISTVCYFF 304
Query: 315 FLEQLLLPDLKTQAIIIAGPFAFTXXXXXXXXXXXXXXKEYIWTYAALEFALVAITVHIF 374
FLE LL+ DL +QAI +A PF+FT +EYIWTYAALEFALVA+ VH+
Sbjct: 305 FLEHLLIRDLNSQAIFVAAPFSFTLALLASTFAVILAIREYIWTYAALEFALVALLVHLL 364
Query: 375 YSMFHLTAIYAILLSSVLGFGISMGINYLYIQY 407
Y+ + IYA+L + +LGFG++M +N L I Y
Sbjct: 365 YATLRVPVIYAMLFAGILGFGMAMCLNLLCICY 397
>AT3G06330.3 | Symbols: | RING/U-box superfamily protein |
chr3:1917334-1919330 FORWARD LENGTH=363
Length = 363
Score = 247 bits (630), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 148/322 (45%), Positives = 180/322 (55%), Gaps = 13/322 (4%)
Query: 22 QLNKEDSDNRPSGKRPDISLQVPPRPAGFGTTSGGK-VLNHSQSFSKGN-SSPRGFLRAL 79
Q+ ++ +++ PS D+S+Q+P R FG K L + SF G SSPRG LR L
Sbjct: 30 QVTEKSTEDVPSCSHLDLSIQIPSRSLPFGNGRNPKGSLKSTPSFKSGTTSSPRGILRNL 89
Query: 80 SFKRKG-NVTDGERSSLLNPEPKTSADNPNMASISEVP-WSRCTSLPVTPATNLSPAVST 137
S K+K + + ERSSLL+P +A PN + P W RC SLP A LSP VST
Sbjct: 90 SLKKKVISQPESERSSLLSPGLMETAKKPNATGSTTSPYWKRCLSLPSRQAAKLSPVVST 149
Query: 138 PISATTYNEQIKPHKDVVRAKVSRSLSVPGRNVVIVRSVSFSTRXXXXXXXXXXXXXTPA 197
+SA + P+KD SRSLS+PGRN VIVRS+SF +
Sbjct: 150 QLSAGVPGD--PPNKDY-----SRSLSMPGRNKVIVRSISFDNHKARVSSETSADQVSSV 202
Query: 198 PVXXXXXXXXXXXXXVCRICFDVCDERNTFKMECSCKGDLTLVHEECLIKWFSLKGNKKC 257
VCRIC DVC+E NT KMECSCKGDL LVHE C +KWFS KG + C
Sbjct: 203 -PPEETDEEIPEEEAVCRICLDVCEEGNTLKMECSCKGDLRLVHEACAMKWFSTKGTRTC 261
Query: 258 DVCGQEVQNLPVTXXXX-XXXXXXXXXXXXXXXXXXESISAWQDFVVLVLISTICYFFFL 316
DVC Q VQNLPVT +++SAWQ+FVVLVLIST+CYFFFL
Sbjct: 262 DVCRQVVQNLPVTLVRVPTPNQQNNRRGSSQQNMPSQTVSAWQEFVVLVLISTVCYFFFL 321
Query: 317 EQLLLPDLKTQAIIIAGPFAFT 338
EQLL+ DL QAI IA PF+ T
Sbjct: 322 EQLLIRDLNKQAIYIAAPFSLT 343
>AT3G06330.2 | Symbols: | RING/U-box superfamily protein |
chr3:1918512-1919709 FORWARD LENGTH=257
Length = 257
Score = 244 bits (623), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 124/250 (49%), Positives = 150/250 (60%), Gaps = 2/250 (0%)
Query: 165 VPGRNVVIVRSVSFSTRXXXXXXXXXXXXXTPAPVXXXXXXXXXXXXXVCRICFDVCDER 224
+PGRN VIVRS+SF + P VCRIC DVC+E
Sbjct: 1 MPGRNKVIVRSISFDNHKARVSSETSADQVSSVP-PEETDEEIPEEEAVCRICLDVCEEG 59
Query: 225 NTFKMECSCKGDLTLVHEECLIKWFSLKGNKKCDVCGQEVQNLPVTXXXXXXXXXXXXXX 284
NT KMECSCKGDL LVHE C +KWFS KG + CDVC Q VQNLPVT
Sbjct: 60 NTLKMECSCKGDLRLVHEACAMKWFSTKGTRTCDVCRQVVQNLPVTLVRVPTPNQQNNRR 119
Query: 285 XXXXXXX-XESISAWQDFVVLVLISTICYFFFLEQLLLPDLKTQAIIIAGPFAFTXXXXX 343
+++SAWQ+FVVLVLIST+CYFFFLEQLL+ DL QAI IA PF+ T
Sbjct: 120 GSSQQNMPSQTVSAWQEFVVLVLISTVCYFFFLEQLLIRDLNKQAIYIAAPFSLTLGLLA 179
Query: 344 XXXXXXXXXKEYIWTYAALEFALVAITVHIFYSMFHLTAIYAILLSSVLGFGISMGINYL 403
+EYIWTYAALEFALV + VHIFY+ L+A Y+IL + +LGFGI++ +N L
Sbjct: 180 SIFAIVLAIREYIWTYAALEFALVGMLVHIFYATVRLSATYSILFAGILGFGIAVCLNSL 239
Query: 404 YIQYVTWRLQ 413
Y+ Y WR++
Sbjct: 240 YLHYFAWRVR 249
>AT5G60580.3 | Symbols: | RING/U-box superfamily protein |
chr5:24354298-24356706 FORWARD LENGTH=487
Length = 487
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 125/434 (28%), Positives = 199/434 (45%), Gaps = 49/434 (11%)
Query: 16 SHQADNQ--LNKEDSDNRPSGKRPDISLQVPPRPAGFG---------------------- 51
S+QA+ + ++ S N +R ++SLQ+P R AG
Sbjct: 22 SNQAEGSSAITEDTSANVQQWRRKNLSLQIPSRAAGLSPEDSVVIKMPPTPSPTPRRVNF 81
Query: 52 ---TTSGGKVLNHSQSFSKGNSSPRGFLRALSFKRKGNVTDGERSSLLNPEPKTSADNPN 108
++S G S +G SS + L K K + TD E+ P S + +
Sbjct: 82 ALTSSSPGPTPTSSSVLPRGKSSLKNLLPKAGCKPKTSNTDIEKGQGNACSPPASQEKAS 141
Query: 109 MA---SISEV---PWSRCTSLPVTP---ATNLSPAVSTPISATTYNEQIKPHKDVVRAKV 159
++ S+S++ R +SLPVTP + + S T ++ T N + H + R++
Sbjct: 142 ISRSLSLSKLFTPRIKRTSSLPVTPVILSNSESAHGGTSVAPQTPNRKGSVH--IARSRS 199
Query: 160 ----SRSLSVPGRNVVIVRSVSFSTRXXXXXXXXXXXXXTPAPVXXXXXXXXXXXXXVCR 215
+ LS+ G + R + + R VCR
Sbjct: 200 VPLNDKELSLKGMDSFF-RVIPSTPRVKEGDVFSNASEAGNTETGDADGEDIPEDEAVCR 258
Query: 216 ICF-DVCDERNTFKMECSCKGDLTLVHEECLIKWFSLKGNKKCDVCGQEVQNLPVTXXXX 274
IC ++C+ T KMECSCKG+L L H++C +KWF++KGNK C+VC QEV+NLPVT
Sbjct: 259 ICLVELCEGGETLKMECSCKGELALAHKDCALKWFTIKGNKTCEVCKQEVKNLPVT---- 314
Query: 275 XXXXXXXXXXXXXXXXXXESISAWQDFVVLVLISTICYFFFLEQLLLPDLKTQAIIIAGP 334
WQ+ VLV+IS + YF FLEQLL+ ++ T AI I+ P
Sbjct: 315 -LLRIQSLRNSGVPQLDVSGYRVWQEVPVLVIISMLAYFCFLEQLLVENMGTGAIAISLP 373
Query: 335 FAFTXXXXXXXXXXXXXXKEYIWTYAALEFALVAITVHIFYSMFHLTAIYAILLSSVLGF 394
F+ + ++W YA+++FALV + HIFYS+ L + ++LLS+ GF
Sbjct: 374 FSCILGLLASMTASTMVMRRFVWIYASVQFALVVLFAHIFYSVVKLQPVLSVLLSTFAGF 433
Query: 395 GISMGINYLYIQYV 408
G+ + + + +++V
Sbjct: 434 GVCICGSSVMVEFV 447
>AT5G60580.1 | Symbols: | RING/U-box superfamily protein |
chr5:24354298-24356706 FORWARD LENGTH=487
Length = 487
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 125/434 (28%), Positives = 199/434 (45%), Gaps = 49/434 (11%)
Query: 16 SHQADNQ--LNKEDSDNRPSGKRPDISLQVPPRPAGFG---------------------- 51
S+QA+ + ++ S N +R ++SLQ+P R AG
Sbjct: 22 SNQAEGSSAITEDTSANVQQWRRKNLSLQIPSRAAGLSPEDSVVIKMPPTPSPTPRRVNF 81
Query: 52 ---TTSGGKVLNHSQSFSKGNSSPRGFLRALSFKRKGNVTDGERSSLLNPEPKTSADNPN 108
++S G S +G SS + L K K + TD E+ P S + +
Sbjct: 82 ALTSSSPGPTPTSSSVLPRGKSSLKNLLPKAGCKPKTSNTDIEKGQGNACSPPASQEKAS 141
Query: 109 MA---SISEV---PWSRCTSLPVTP---ATNLSPAVSTPISATTYNEQIKPHKDVVRAKV 159
++ S+S++ R +SLPVTP + + S T ++ T N + H + R++
Sbjct: 142 ISRSLSLSKLFTPRIKRTSSLPVTPVILSNSESAHGGTSVAPQTPNRKGSVH--IARSRS 199
Query: 160 ----SRSLSVPGRNVVIVRSVSFSTRXXXXXXXXXXXXXTPAPVXXXXXXXXXXXXXVCR 215
+ LS+ G + R + + R VCR
Sbjct: 200 VPLNDKELSLKGMDSFF-RVIPSTPRVKEGDVFSNASEAGNTETGDADGEDIPEDEAVCR 258
Query: 216 ICF-DVCDERNTFKMECSCKGDLTLVHEECLIKWFSLKGNKKCDVCGQEVQNLPVTXXXX 274
IC ++C+ T KMECSCKG+L L H++C +KWF++KGNK C+VC QEV+NLPVT
Sbjct: 259 ICLVELCEGGETLKMECSCKGELALAHKDCALKWFTIKGNKTCEVCKQEVKNLPVT---- 314
Query: 275 XXXXXXXXXXXXXXXXXXESISAWQDFVVLVLISTICYFFFLEQLLLPDLKTQAIIIAGP 334
WQ+ VLV+IS + YF FLEQLL+ ++ T AI I+ P
Sbjct: 315 -LLRIQSLRNSGVPQLDVSGYRVWQEVPVLVIISMLAYFCFLEQLLVENMGTGAIAISLP 373
Query: 335 FAFTXXXXXXXXXXXXXXKEYIWTYAALEFALVAITVHIFYSMFHLTAIYAILLSSVLGF 394
F+ + ++W YA+++FALV + HIFYS+ L + ++LLS+ GF
Sbjct: 374 FSCILGLLASMTASTMVMRRFVWIYASVQFALVVLFAHIFYSVVKLQPVLSVLLSTFAGF 433
Query: 395 GISMGINYLYIQYV 408
G+ + + + +++V
Sbjct: 434 GVCICGSSVMVEFV 447
>AT3G09760.1 | Symbols: | RING/U-box superfamily protein |
chr3:2992975-2995451 REVERSE LENGTH=491
Length = 491
Score = 171 bits (433), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 114/200 (57%), Gaps = 5/200 (2%)
Query: 213 VCRICF-DVCDERNTFKMECSCKGDLTLVHEECLIKWFSLKGNKKCDVCGQEVQNLPVTX 271
VCRIC ++ ++ FKMEC C+G+L L H+EC IKWF++KGN+ CDVC QEVQNLPVT
Sbjct: 265 VCRICLVELGEDSEAFKMECLCRGELALAHKECTIKWFTIKGNRTCDVCKQEVQNLPVTL 324
Query: 272 XXXXXXXXXXXXXXXXXXXXXESISAWQDFVVLVLISTICYFFFLEQLLLPDLKTQAIII 331
S WQD +LV++S + YF FLEQLLL +++ AI +
Sbjct: 325 LRMQNSRGSIGAPDAEAA----HYSLWQDVPILVIVSMLAYFCFLEQLLLTKMQSGAIAV 380
Query: 332 AGPFAFTXXXXXXXXXXXXXXKEYIWTYAALEFALVAITVHIFYSMFHLTAIYAILLSSV 391
+ PF+ K Y+W YA +F LV HIF+++ + + AILL+++
Sbjct: 381 SLPFSCVLGLFASMTATTMVPKRYVWIYATTQFGLVVFFSHIFFTLVRMQPVVAILLATI 440
Query: 392 LGFGISMGINYLYIQYVTWR 411
+GFG++M +++ WR
Sbjct: 441 VGFGLTMSGTTGIVEFSKWR 460
>AT5G60580.4 | Symbols: | RING/U-box superfamily protein |
chr5:24354298-24356706 FORWARD LENGTH=494
Length = 494
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 126/441 (28%), Positives = 199/441 (45%), Gaps = 56/441 (12%)
Query: 16 SHQADNQ--LNKEDSDNRPSGKRPDISLQVPPRPAGFG---------------------- 51
S+QA+ + ++ S N +R ++SLQ+P R AG
Sbjct: 22 SNQAEGSSAITEDTSANVQQWRRKNLSLQIPSRAAGLSPEDSVVIKMPPTPSPTPRRVNF 81
Query: 52 ---TTSGGKVLNHSQSFSKGNSSPRGFLRALSFKRKGNVTDGERSSLLNPEPKTSADNPN 108
++S G S +G SS + L K K + TD E+ P S + +
Sbjct: 82 ALTSSSPGPTPTSSSVLPRGKSSLKNLLPKAGCKPKTSNTDIEKGQGNACSPPASQEKAS 141
Query: 109 MA---SISEV---PWSRCTSLPVTP---ATNLSPAVSTPISATTYNEQIKPHKDVVRAKV 159
++ S+S++ R +SLPVTP + + S T ++ T N + H + R++
Sbjct: 142 ISRSLSLSKLFTPRIKRTSSLPVTPVILSNSESAHGGTSVAPQTPNRKGSVH--IARSRS 199
Query: 160 ----SRSLSVPGRNVVIVRSVSFSTRXXXXXXXXXXXXXTPAPVXXXXXXXXXXXXXVCR 215
+ LS+ G + R + + R VCR
Sbjct: 200 VPLNDKELSLKGMDSFF-RVIPSTPRVKEGDVFSNASEAGNTETGDADGEDIPEDEAVCR 258
Query: 216 ICF-DVCDERNTFKMECSCKGDLTLVHEECLIKWFSLKGNKKCDVCGQEVQNLPVTXXXX 274
IC ++C+ T KMECSCKG+L L H++C +KWF++KGNK C+VC QEV+NLPVT
Sbjct: 259 ICLVELCEGGETLKMECSCKGELALAHKDCALKWFTIKGNKTCEVCKQEVKNLPVT---- 314
Query: 275 XXXXXXXXXXXXXXXXXXESISAWQDFVVLVLISTICYFFFLEQLLLPDLKTQAIIIAGP 334
WQ+ VLV+IS + YF FLEQLL+ ++ T AI I+ P
Sbjct: 315 -LLRIQSLRNSGVPQLDVSGYRVWQEVPVLVIISMLAYFCFLEQLLVENMGTGAIAISLP 373
Query: 335 F-------AFTXXXXXXXXXXXXXXKEYIWTYAALEFALVAITVHIFYSMFHLTAIYAIL 387
F A + ++W YA+++FALV + HIFYS+ L + ++L
Sbjct: 374 FSCILGLLASMTASTMVLEYSYAVMRRFVWIYASVQFALVVLFAHIFYSVVKLQPVLSVL 433
Query: 388 LSSVLGFGISMGINYLYIQYV 408
LS+ GFG+ + + + +++V
Sbjct: 434 LSTFAGFGVCICGSSVMVEFV 454
>AT5G60580.2 | Symbols: | RING/U-box superfamily protein |
chr5:24354298-24356706 FORWARD LENGTH=494
Length = 494
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 126/441 (28%), Positives = 199/441 (45%), Gaps = 56/441 (12%)
Query: 16 SHQADNQ--LNKEDSDNRPSGKRPDISLQVPPRPAGFG---------------------- 51
S+QA+ + ++ S N +R ++SLQ+P R AG
Sbjct: 22 SNQAEGSSAITEDTSANVQQWRRKNLSLQIPSRAAGLSPEDSVVIKMPPTPSPTPRRVNF 81
Query: 52 ---TTSGGKVLNHSQSFSKGNSSPRGFLRALSFKRKGNVTDGERSSLLNPEPKTSADNPN 108
++S G S +G SS + L K K + TD E+ P S + +
Sbjct: 82 ALTSSSPGPTPTSSSVLPRGKSSLKNLLPKAGCKPKTSNTDIEKGQGNACSPPASQEKAS 141
Query: 109 MA---SISEV---PWSRCTSLPVTP---ATNLSPAVSTPISATTYNEQIKPHKDVVRAKV 159
++ S+S++ R +SLPVTP + + S T ++ T N + H + R++
Sbjct: 142 ISRSLSLSKLFTPRIKRTSSLPVTPVILSNSESAHGGTSVAPQTPNRKGSVH--IARSRS 199
Query: 160 ----SRSLSVPGRNVVIVRSVSFSTRXXXXXXXXXXXXXTPAPVXXXXXXXXXXXXXVCR 215
+ LS+ G + R + + R VCR
Sbjct: 200 VPLNDKELSLKGMDSFF-RVIPSTPRVKEGDVFSNASEAGNTETGDADGEDIPEDEAVCR 258
Query: 216 ICF-DVCDERNTFKMECSCKGDLTLVHEECLIKWFSLKGNKKCDVCGQEVQNLPVTXXXX 274
IC ++C+ T KMECSCKG+L L H++C +KWF++KGNK C+VC QEV+NLPVT
Sbjct: 259 ICLVELCEGGETLKMECSCKGELALAHKDCALKWFTIKGNKTCEVCKQEVKNLPVT---- 314
Query: 275 XXXXXXXXXXXXXXXXXXESISAWQDFVVLVLISTICYFFFLEQLLLPDLKTQAIIIAGP 334
WQ+ VLV+IS + YF FLEQLL+ ++ T AI I+ P
Sbjct: 315 -LLRIQSLRNSGVPQLDVSGYRVWQEVPVLVIISMLAYFCFLEQLLVENMGTGAIAISLP 373
Query: 335 F-------AFTXXXXXXXXXXXXXXKEYIWTYAALEFALVAITVHIFYSMFHLTAIYAIL 387
F A + ++W YA+++FALV + HIFYS+ L + ++L
Sbjct: 374 FSCILGLLASMTASTMVLEYSYAVMRRFVWIYASVQFALVVLFAHIFYSVVKLQPVLSVL 433
Query: 388 LSSVLGFGISMGINYLYIQYV 408
LS+ GFG+ + + + +++V
Sbjct: 434 LSTFAGFGVCICGSSVMVEFV 454
>AT5G03180.2 | Symbols: | RING/U-box superfamily protein |
chr5:754201-756411 REVERSE LENGTH=466
Length = 466
Score = 158 bits (399), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 111/203 (54%), Gaps = 6/203 (2%)
Query: 213 VCRICF-DVCDERNTFKMECSCKGDLTLVHEECLIKWFSLKGNKKCDVCGQEVQNLPVTX 271
VCRIC ++ ++ FKMEC CKG+L L H+ C IKWF++KGN CDVC QEV+NLPVT
Sbjct: 250 VCRICMVEMEEDEEAFKMECMCKGELALAHKTCTIKWFTIKGNITCDVCKQEVRNLPVTL 309
Query: 272 XXXXXXXXXXXXXXXXXXXXXESISAWQDFVVLVLISTICYFFFLEQLLLPDLKTQAIII 331
++ WQD +LV++S + YF FLEQLL+ D+K+ A+ I
Sbjct: 310 LRVQDSQNRSRAARDIEISRFNNV--WQDIPILVIVSMLAYFCFLEQLLIIDMKSSAVAI 367
Query: 332 AGPFAFTXXXXXXXXXXXXXXKEYIWTYAALEFALVAITVHIFYSMFHLTA---IYAILL 388
A PF+ K Y+W YA ++F V + +FY + + I+L
Sbjct: 368 ALPFSCIIGLLASMISTTMVKKNYVWIYATVQFGFVVLFAQLFYRVVRFDVKQPVMCIVL 427
Query: 389 SSVLGFGISMGINYLYIQYVTWR 411
++++GFG++M +Y+ WR
Sbjct: 428 ATMIGFGLTMTGTTAINEYLKWR 450
>AT5G03180.1 | Symbols: | RING/U-box superfamily protein |
chr5:754201-756411 REVERSE LENGTH=462
Length = 462
Score = 158 bits (399), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 111/203 (54%), Gaps = 6/203 (2%)
Query: 213 VCRICF-DVCDERNTFKMECSCKGDLTLVHEECLIKWFSLKGNKKCDVCGQEVQNLPVTX 271
VCRIC ++ ++ FKMEC CKG+L L H+ C IKWF++KGN CDVC QEV+NLPVT
Sbjct: 246 VCRICMVEMEEDEEAFKMECMCKGELALAHKTCTIKWFTIKGNITCDVCKQEVRNLPVTL 305
Query: 272 XXXXXXXXXXXXXXXXXXXXXESISAWQDFVVLVLISTICYFFFLEQLLLPDLKTQAIII 331
++ WQD +LV++S + YF FLEQLL+ D+K+ A+ I
Sbjct: 306 LRVQDSQNRSRAARDIEISRFNNV--WQDIPILVIVSMLAYFCFLEQLLIIDMKSSAVAI 363
Query: 332 AGPFAFTXXXXXXXXXXXXXXKEYIWTYAALEFALVAITVHIFYSMFHLTA---IYAILL 388
A PF+ K Y+W YA ++F V + +FY + + I+L
Sbjct: 364 ALPFSCIIGLLASMISTTMVKKNYVWIYATVQFGFVVLFAQLFYRVVRFDVKQPVMCIVL 423
Query: 389 SSVLGFGISMGINYLYIQYVTWR 411
++++GFG++M +Y+ WR
Sbjct: 424 ATMIGFGLTMTGTTAINEYLKWR 446
>AT4G34100.1 | Symbols: | RING/U-box superfamily protein |
chr4:16330590-16334864 FORWARD LENGTH=1108
Length = 1108
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 213 VCRICFDVCDERNTFKMECSCKGDLTLVHEECLIKWFSLKGNKKCDVCGQEVQNLPV 269
VCRIC + D N + C+C G + VH++CL++W + ++C+VC PV
Sbjct: 67 VCRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHPFSFSPV 123
>AT4G34100.2 | Symbols: | RING/U-box superfamily protein |
chr4:16330590-16334864 FORWARD LENGTH=1107
Length = 1107
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 213 VCRICFDVCDERNTFKMECSCKGDLTLVHEECLIKWFSLKGNKKCDVCGQEVQNLPV 269
VCRIC + D N + C+C G + VH++CL++W + ++C+VC PV
Sbjct: 67 VCRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHPFSFSPV 123
>AT1G14260.2 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr1:4873200-4874430 FORWARD LENGTH=265
Length = 265
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 214 CRICFDVCDERNTFKMECSCKGDLTLVHEECLIKWFSLKGNKKCDVCGQEVQ 265
CRIC D CD +N + C+C G L H +C+ +W + KGN C++C Q Q
Sbjct: 57 CRICQDECDIKN-LESPCACNGSLKYAHRKCVQRWCNEKGNTICEICHQPYQ 107
>AT1G14260.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr1:4873200-4874430 FORWARD LENGTH=265
Length = 265
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 214 CRICFDVCDERNTFKMECSCKGDLTLVHEECLIKWFSLKGNKKCDVCGQEVQ 265
CRIC D CD +N + C+C G L H +C+ +W + KGN C++C Q Q
Sbjct: 57 CRICQDECDIKN-LESPCACNGSLKYAHRKCVQRWCNEKGNTICEICHQPYQ 107
>AT5G05830.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr5:1755910-1756825 FORWARD LENGTH=204
Length = 204
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 214 CRICFDVCDERNT-----FKMECSCKGDLTLVHEECLIKWFSLKGNKKCDVCGQEVQNL 267
CRIC D N ++ CSCK DL H+ C WF +KGNK C+VCG N+
Sbjct: 79 CRICHMSLDAANLESGVPIELGCSCKADLAAAHKHCAETWFKIKGNKICEVCGSIAGNV 137
>AT5G59000.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr5:23818768-23820018 FORWARD LENGTH=231
Length = 231
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 227 FKMECSCKGDLTLVHEECLIKWFSLKGNKKCDVCGQEVQNL 267
++ CSCKGDL + H +C WF +KGN C++CG N+
Sbjct: 130 LQLGCSCKGDLGVAHSKCAETWFKIKGNMTCEICGAMALNV 170
>AT5G08750.2 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr5:2853066-2854343 FORWARD LENGTH=363
Length = 363
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 227 FKMECSCKGDLTLVHEECLIKWFSLKGNKKCDVCGQEVQNL 267
++ CSCK DL LVH C +KWF G+ C++CG+ +N+
Sbjct: 123 LELGCSCKNDLALVHYACALKWFVNHGSTVCEICGKTTENI 163
>AT5G08750.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr5:2853066-2854343 FORWARD LENGTH=363
Length = 363
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 227 FKMECSCKGDLTLVHEECLIKWFSLKGNKKCDVCGQEVQNL 267
++ CSCK DL LVH C +KWF G+ C++CG+ +N+
Sbjct: 123 LELGCSCKNDLALVHYACALKWFVNHGSTVCEICGKTTENI 163
>AT5G08750.3 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr5:2852912-2854343 FORWARD LENGTH=370
Length = 370
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 227 FKMECSCKGDLTLVHEECLIKWFSLKGNKKCDVCGQEVQNL 267
++ CSCK DL LVH C +KWF G+ C++CG+ +N+
Sbjct: 130 LELGCSCKNDLALVHYACALKWFVNHGSTVCEICGKTTENI 170
>AT5G01070.2 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr5:25094-25799 REVERSE LENGTH=206
Length = 206
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 229 MECSCKGDLTLVHEECLIKWFSLKGNKKCDVCGQEVQNL 267
+ CSCK DL VH++C WF +KGNK C++C QN
Sbjct: 98 LGCSCKDDLGYVHKQCADTWFKIKGNKTCEICRSIAQNF 136
>AT5G63780.1 | Symbols: SHA1 | RING/FYVE/PHD zinc finger superfamily
protein | chr5:25525160-25526446 FORWARD LENGTH=367
Length = 367
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 227 FKMECSCKGDLTLVHEECLIKWFSLKGNKKCDVCGQEVQNL 267
++ CSCK +L LVH C +KWF G+ C++CG +N+
Sbjct: 135 LELGCSCKNELALVHYACALKWFLNHGSTVCEICGHPAENI 175