Miyakogusa Predicted Gene

Lj6g3v1915950.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1915950.1 CUFF.60154.1
         (345 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G15545.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   329   2e-90
AT1G56080.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   192   2e-49
AT1G16520.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   189   3e-48

>AT4G15545.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G16520.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr4:8875932-8877567 FORWARD LENGTH=337
          Length = 337

 Score =  329 bits (844), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 184/341 (53%), Positives = 227/341 (66%), Gaps = 20/341 (5%)

Query: 5   SGSSNLNLPEELLQALPSDPFEQLDVARRITSIALSTRVNALQSESSALRAELAEKERVI 64
           +GS + +LP+ELLQ LPSDPFEQLDVAR+ITSIALSTRV+AL+SESS LR  LAEKE+  
Sbjct: 17  TGSRSFDLPDELLQVLPSDPFEQLDVARKITSIALSTRVSALESESSDLRELLAEKEKEF 76

Query: 65  GELQSQVEPLDAALSETAEKLARAEEDKERLVKENASLSNTVRKLSRDVSKLEVFRRTLM 124
            ELQS VE L+A+LS+   KL+ A+ +KE L++ENASLSNTV++L RDVSKLE FR+TLM
Sbjct: 77  EELQSHVESLEASLSDAFHKLSLADGEKENLIRENASLSNTVKRLQRDVSKLEGFRKTLM 136

Query: 125 HSLQEDDQTSGGAPGIAAMLQSQASITSTSQLGDEDAXXXXXXXXXXXXGTYTSDTGNSF 184
            SLQ+DDQ +G    IA                ++D                 S+     
Sbjct: 137 MSLQDDDQNAGTTQIIA------------KPTPNDDDTPFQPSRHSSIQSQQASEAIEPA 184

Query: 185 AEERESDAARPRVSHSLLLASQTNTPRFTXXXXXXXXXXXXXXTRTSSKPVSPRRNAVSF 244
           A + E+DA +P +S SL L SQT TPR T               +T+S+P+SPRR++VSF
Sbjct: 185 ATDNENDAPKPSLSASLPLVSQTTTPRLT-PPGSPPILSASGTPKTTSRPISPRRHSVSF 243

Query: 245 SLPRGNYDDRXXXXXXXXXXXXXXXXXXQTARTRVDGKEFFRQVRSRLDYEQFGAFLANV 304
           +  RG +DD                   QTARTRVDGKEFFRQVRSRL YEQFGAFL NV
Sbjct: 244 ATTRGMFDD-------TRSSISISEPGSQTARTRVDGKEFFRQVRSRLSYEQFGAFLGNV 296

Query: 305 KELNSHKQTKEETLKKADEIFGPENKDLYTIFEGLITRNVH 345
           K+LN+HKQT+EETL+KA+EIFG +N+DLY IFEGLITRN H
Sbjct: 297 KDLNAHKQTREETLRKAEEIFGGDNRDLYVIFEGLITRNAH 337


>AT1G56080.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: plasma membrane;
           EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6
           growth stages; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT1G16520.1); Has 196 Blast
           hits to 193 proteins in 50 species: Archae - 2; Bacteria
           - 0; Metazoa - 9; Fungi - 2; Plants - 132; Viruses - 0;
           Other Eukaryotes - 51 (source: NCBI BLink). |
           chr1:20974457-20976215 REVERSE LENGTH=310
          Length = 310

 Score =  192 bits (489), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 182/344 (52%), Gaps = 40/344 (11%)

Query: 1   MEESSGSSNLNLPEELLQALPSDPFEQLDVARRITSIALSTRVNALQSESSALRAELAEK 60
           M +S G  + NL +E+L  +P+DP++QLD+AR+ITS+A+++RV+ L+S+ S LR +L EK
Sbjct: 1   MSQSGG--DFNLSDEILAVIPTDPYDQLDLARKITSMAIASRVSNLESQVSGLRQKLLEK 58

Query: 61  ERVIGELQSQVEPLDAALSETAEKLARAEEDKERLVKENASLSNTVRKLSRDVSKLEVFR 120
           +R++ EL+ +V   +    E    L    ++  +L +E  SL+ T +KL RD +KLE F+
Sbjct: 59  DRLVHELEDRVSSFERLYHEADSSLKNVVDENMKLTQERDSLAITAKKLGRDYAKLEAFK 118

Query: 121 RTLMHSLQEDDQTSGGAPGIAAMLQSQASITSTSQLGDEDAXXXXXXXXXXXXGTYTSDT 180
           R LM SL +D+                      SQ    D             G+Y+++ 
Sbjct: 119 RQLMQSLNDDN---------------------PSQTETADVRMVPRGKDENSNGSYSNNE 157

Query: 181 GNSFAEERESDAARPRVSHSLLLASQTNTPRFTXXXXXXXXXXXXXXTRTSSKPVSPRRN 240
           G S A +R+S    P+ S +    + + TP+                 R+ S   SP+  
Sbjct: 158 GLSEARQRQS--MTPQFSPAF---TPSGTPKIL---------STAASPRSYSAASSPKLF 203

Query: 241 AVSFSLPRGNYDDRXXXXXXXXXXXXXXXXXXQTA---RTRVDGKEFFRQVRSRLDYEQF 297
           + + S    +YD R                   +      R+DGKEFFRQ RSRL YEQF
Sbjct: 204 SGAASPTSSHYDIRMWSSTSQQSSVANSPPRSHSVSARHPRIDGKEFFRQARSRLSYEQF 263

Query: 298 GAFLANVKELNSHKQTKEETLKKADEIFGPENKDLYTIFEGLIT 341
            AFLAN+KELN+ KQ +EETL+KA+EIFG EN DLY  F+GL+T
Sbjct: 264 SAFLANIKELNARKQGREETLQKAEEIFGKENNDLYISFKGLLT 307


>AT1G16520.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: plasma membrane;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT1G56080.1); Has 243 Blast
           hits to 234 proteins in 69 species: Archae - 2; Bacteria
           - 2; Metazoa - 61; Fungi - 9; Plants - 125; Viruses - 0;
           Other Eukaryotes - 44 (source: NCBI BLink). |
           chr1:5648904-5650998 FORWARD LENGTH=325
          Length = 325

 Score =  189 bits (479), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 130/351 (37%), Positives = 177/351 (50%), Gaps = 46/351 (13%)

Query: 9   NLNLPEELLQALPSDPFEQLDVARRITSIALSTRVNALQSESSALRAELAEKERVIGELQ 68
           +  LPEE+L  +P DPFEQLD+AR+ITS+A+++RV+ L SE   LR +L  KE V+ EL+
Sbjct: 7   DFELPEEVLSVIPMDPFEQLDLARKITSMAIASRVSNLDSEVVELRQKLLGKESVVRELE 66

Query: 69  SQVEPLDAALSETAEKLARAEEDKERLVKENASLSNTVRKLSRDVSKLEVFRRTLMHSLQ 128
            +   L+    E   +L    ED   L KE  SL+ TV KL+RD++KLE F+R L+ SL 
Sbjct: 67  EKASRLERDCREADSRLKVVLEDNMNLTKEKDSLAMTVTKLTRDLAKLETFKRQLIKSLS 126

Query: 129 ED-------------DQTSGGAPGIAAMLQSQASITSTSQLGDEDAXXXXXXXXXXXXGT 175
           ++             DQ  G  PG    + + +   + S  G  D               
Sbjct: 127 DESGPQTEPVDIRTCDQ-PGSYPGKDGRINAHSIKQAYS--GSTDTNNPVVEASKY---- 179

Query: 176 YTSDTGNSFAEERESDAARPRVSHSLLLASQTNTPRFTXXXXXXXXXXXXXXTRTSSKPV 235
               TGN F+    +    PR++        T TP+                 + +S  V
Sbjct: 180 ----TGNKFSM---TSYISPRLTP-------TATPKIISTSVSPRGYSAAGSPKRTSGAV 225

Query: 236 SPRRNAVSFSLPRGNYDDRXXXXXXXXXXXXXXXXXXQTART-RVDGKEFFRQVRSRLDY 294
           SP +  + +                              ART R+DGKEFFRQ RSRL Y
Sbjct: 226 SPTKATLWYP-----------SSQQSSAANSPPRNRTLPARTPRMDGKEFFRQARSRLSY 274

Query: 295 EQFGAFLANVKELNSHKQTKEETLKKADEIFGPENKDLYTIFEGLITRNVH 345
           EQF +FLAN+KELN+ KQT+EETL+KADEIFG ENKDLY  F+GL+ RN+ 
Sbjct: 275 EQFSSFLANIKELNAQKQTREETLRKADEIFGEENKDLYLSFQGLLNRNMR 325