Miyakogusa Predicted Gene

Lj6g3v1915860.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1915860.1 tr|B6UIB8|B6UIB8_MAIZE TPD1 OS=Zea mays PE=2
SV=1,42.2,2e-19, ,gene.g66954.t1.1
         (168 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32583.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   114   3e-26
AT4G24972.1 | Symbols: TPD1 | tapetum determinant 1 | chr4:12838...   103   4e-23

>AT1G32583.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           endomembrane system; BEST Arabidopsis thaliana protein
           match is: tapetum determinant 1 (TAIR:AT4G24972.1); Has
           35333 Blast hits to 34131 proteins in 2444 species:
           Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
           991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
           (source: NCBI BLink). | chr1:11787351-11788103 FORWARD
           LENGTH=179
          Length = 179

 Score =  114 bits (285), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/145 (43%), Positives = 84/145 (57%), Gaps = 23/145 (15%)

Query: 42  EGRNGSITVSVKAE------EHAHSTSSKIWLH-----------GSCTKRDISISQSRGS 84
           EG N   ++++KA       E+  + S K+ L              C+K DI + Q  GS
Sbjct: 34  EGSNDRRSIALKARSFVSINENRTALSRKLLLSPDIGDGTNRIGQDCSKDDIVLFQ--GS 91

Query: 85  T----SGIPQYIVQIVNTCVSGCAPHDIHLHCGWFASARIINPRVFKRLSYDDCLVNGGN 140
           T    SG+P Y V+I N+CVS C   +IH+ CGWF+S R++NPRVF+RL YDDCLVN G 
Sbjct: 92  TNPLPSGVPSYTVEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQ 151

Query: 141 PLESSQIIRFTYSNSFMYPLAFKSA 165
           PL   Q + F Y+NSF YPL+  S 
Sbjct: 152 PLGPGQSLSFQYANSFSYPLSVASV 176


>AT4G24972.1 | Symbols: TPD1 | tapetum determinant 1 |
           chr4:12838220-12839619 FORWARD LENGTH=176
          Length = 176

 Score =  103 bits (258), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 47/93 (50%), Positives = 64/93 (68%), Gaps = 2/93 (2%)

Query: 71  CTKRDISISQ--SRGSTSGIPQYIVQIVNTCVSGCAPHDIHLHCGWFASARIINPRVFKR 128
           C   DI ++Q  +    +GIP Y+V+I N C+SGC    IH++CGWF+SA++INPRVFKR
Sbjct: 77  CKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSGCIISRIHINCGWFSSAKLINPRVFKR 136

Query: 129 LSYDDCLVNGGNPLESSQIIRFTYSNSFMYPLA 161
           + YDDCLVN G PL     + F Y+N+F Y L+
Sbjct: 137 IHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLS 169