Miyakogusa Predicted Gene

Lj6g3v1901370.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1901370.1 tr|Q3LUS2|Q3LUS2_9ROSI S-adenosylmethionine
decarboxylase 3 (Fragment) OS=Populus maximowiczii x
Pop,66.2,3e-19,SAM_decarbox,S-adenosylmethionine decarboxylase;
S-adenosylmethionine decarboxylase,S-adenosylmethio,CUFF.60127.1
         (103 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G18930.1 | Symbols: BUD2, SAMDC4 | Adenosylmethionine decarbo...   115   7e-27
AT5G15950.2 | Symbols:  | Adenosylmethionine decarboxylase famil...    88   1e-18
AT5G15950.1 | Symbols:  | Adenosylmethionine decarboxylase famil...    88   1e-18
AT3G25570.2 | Symbols:  | Adenosylmethionine decarboxylase famil...    87   2e-18
AT3G25570.1 | Symbols:  | Adenosylmethionine decarboxylase famil...    87   2e-18
AT3G02470.4 | Symbols:  | S-adenosylmethionine decarboxylase | c...    86   5e-18
AT3G02470.3 | Symbols: SAMDC | S-adenosylmethionine decarboxylas...    86   5e-18
AT3G02470.1 | Symbols: SAMDC | S-adenosylmethionine decarboxylas...    86   5e-18

>AT5G18930.1 | Symbols: BUD2, SAMDC4 | Adenosylmethionine
           decarboxylase family protein | chr5:6312172-6313215
           REVERSE LENGTH=347
          Length = 347

 Score =  115 bits (288), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 55/88 (62%), Positives = 62/88 (70%), Gaps = 1/88 (1%)

Query: 1   MEICMTDLDPTLARKFFQRPXXXXXXXXXX-XXMTELSGINEINRNALICDFAFDPCGYS 59
           +E+CMT+LD   AR FF+R              MT LSGI+ IN NA ICDFAFDPCGYS
Sbjct: 178 VEVCMTELDRVNARSFFKRKGDEKNNSDSAGKEMTRLSGIDNINANAYICDFAFDPCGYS 237

Query: 60  MNSMDEDWYSTIHVTPEDGYSYASFECA 87
           MN +D D YSTIHVTPEDG+SYASFEC 
Sbjct: 238 MNGVDGDRYSTIHVTPEDGFSYASFECG 265


>AT5G15950.2 | Symbols:  | Adenosylmethionine decarboxylase family
           protein | chr5:5206706-5207794 FORWARD LENGTH=362
          Length = 362

 Score = 88.2 bits (217), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/85 (51%), Positives = 55/85 (64%), Gaps = 6/85 (7%)

Query: 1   MEICMTDLDPTLARKFFQRPXXXXXXXXXXXXMTELSGINEINRNALICDFAFDPCGYSM 60
           +E+CMT LD   A  F++              MT+ SGI +I   + ICDF F+PCGYSM
Sbjct: 180 LEMCMTGLDKDKASVFYKN------ESSSAGSMTDNSGIRKILPQSQICDFEFEPCGYSM 233

Query: 61  NSMDEDWYSTIHVTPEDGYSYASFE 85
           NS++ D  STIHVTPEDG+SYASFE
Sbjct: 234 NSIEGDAISTIHVTPEDGFSYASFE 258


>AT5G15950.1 | Symbols:  | Adenosylmethionine decarboxylase family
           protein | chr5:5206706-5207794 FORWARD LENGTH=362
          Length = 362

 Score = 88.2 bits (217), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/85 (51%), Positives = 55/85 (64%), Gaps = 6/85 (7%)

Query: 1   MEICMTDLDPTLARKFFQRPXXXXXXXXXXXXMTELSGINEINRNALICDFAFDPCGYSM 60
           +E+CMT LD   A  F++              MT+ SGI +I   + ICDF F+PCGYSM
Sbjct: 180 LEMCMTGLDKDKASVFYKN------ESSSAGSMTDNSGIRKILPQSQICDFEFEPCGYSM 233

Query: 61  NSMDEDWYSTIHVTPEDGYSYASFE 85
           NS++ D  STIHVTPEDG+SYASFE
Sbjct: 234 NSIEGDAISTIHVTPEDGFSYASFE 258


>AT3G25570.2 | Symbols:  | Adenosylmethionine decarboxylase family
           protein | chr3:9287413-9288462 REVERSE LENGTH=349
          Length = 349

 Score = 87.0 bits (214), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/85 (52%), Positives = 53/85 (62%), Gaps = 6/85 (7%)

Query: 1   MEICMTDLDPTLARKFFQRPXXXXXXXXXXXXMTELSGINEINRNALICDFAFDPCGYSM 60
           +E+CMT LD   A  FF+              MT  SGI  I   + ICDF F+PCGYSM
Sbjct: 183 LEMCMTGLDNIKASVFFK------TNSVSASEMTISSGIRNILPGSEICDFNFEPCGYSM 236

Query: 61  NSMDEDWYSTIHVTPEDGYSYASFE 85
           NS++ D  STIHVTPEDG+SYASFE
Sbjct: 237 NSIEGDAVSTIHVTPEDGFSYASFE 261


>AT3G25570.1 | Symbols:  | Adenosylmethionine decarboxylase family
           protein | chr3:9287413-9288462 REVERSE LENGTH=349
          Length = 349

 Score = 87.0 bits (214), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/85 (52%), Positives = 53/85 (62%), Gaps = 6/85 (7%)

Query: 1   MEICMTDLDPTLARKFFQRPXXXXXXXXXXXXMTELSGINEINRNALICDFAFDPCGYSM 60
           +E+CMT LD   A  FF+              MT  SGI  I   + ICDF F+PCGYSM
Sbjct: 183 LEMCMTGLDNIKASVFFK------TNSVSASEMTISSGIRNILPGSEICDFNFEPCGYSM 236

Query: 61  NSMDEDWYSTIHVTPEDGYSYASFE 85
           NS++ D  STIHVTPEDG+SYASFE
Sbjct: 237 NSIEGDAVSTIHVTPEDGFSYASFE 261


>AT3G02470.4 | Symbols:  | S-adenosylmethionine decarboxylase |
           chr3:510223-511323 FORWARD LENGTH=366
          Length = 366

 Score = 85.9 bits (211), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/85 (51%), Positives = 55/85 (64%), Gaps = 6/85 (7%)

Query: 1   MEICMTDLDPTLARKFFQRPXXXXXXXXXXXXMTELSGINEINRNALICDFAFDPCGYSM 60
           +E+CMT LD   A  F++              MT+ SGI +I   + ICDF F+PCGYSM
Sbjct: 181 LEMCMTGLDREKAAVFYK------DEADKTGSMTDNSGIRKILPKSEICDFEFEPCGYSM 234

Query: 61  NSMDEDWYSTIHVTPEDGYSYASFE 85
           NS++ D  STIHVTPEDG+SYASFE
Sbjct: 235 NSIEGDAISTIHVTPEDGFSYASFE 259


>AT3G02470.3 | Symbols: SAMDC | S-adenosylmethionine decarboxylase |
           chr3:510223-511323 FORWARD LENGTH=366
          Length = 366

 Score = 85.9 bits (211), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/85 (51%), Positives = 55/85 (64%), Gaps = 6/85 (7%)

Query: 1   MEICMTDLDPTLARKFFQRPXXXXXXXXXXXXMTELSGINEINRNALICDFAFDPCGYSM 60
           +E+CMT LD   A  F++              MT+ SGI +I   + ICDF F+PCGYSM
Sbjct: 181 LEMCMTGLDREKAAVFYK------DEADKTGSMTDNSGIRKILPKSEICDFEFEPCGYSM 234

Query: 61  NSMDEDWYSTIHVTPEDGYSYASFE 85
           NS++ D  STIHVTPEDG+SYASFE
Sbjct: 235 NSIEGDAISTIHVTPEDGFSYASFE 259


>AT3G02470.1 | Symbols: SAMDC | S-adenosylmethionine decarboxylase |
           chr3:510223-511323 FORWARD LENGTH=366
          Length = 366

 Score = 85.9 bits (211), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/85 (51%), Positives = 55/85 (64%), Gaps = 6/85 (7%)

Query: 1   MEICMTDLDPTLARKFFQRPXXXXXXXXXXXXMTELSGINEINRNALICDFAFDPCGYSM 60
           +E+CMT LD   A  F++              MT+ SGI +I   + ICDF F+PCGYSM
Sbjct: 181 LEMCMTGLDREKAAVFYK------DEADKTGSMTDNSGIRKILPKSEICDFEFEPCGYSM 234

Query: 61  NSMDEDWYSTIHVTPEDGYSYASFE 85
           NS++ D  STIHVTPEDG+SYASFE
Sbjct: 235 NSIEGDAISTIHVTPEDGFSYASFE 259