Miyakogusa Predicted Gene

Lj6g3v1898080.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1898080.1 Non Chatacterized Hit- tr|I1GZ12|I1GZ12_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,35.8,6e-18,coiled-coil,NULL,gene.g66888.t1.1
         (182 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08120.1 | Symbols: MPB2C | movement protein binding protein ...   130   4e-31

>AT5G08120.1 | Symbols: MPB2C | movement protein binding protein 2C
           | chr5:2600743-2602678 REVERSE LENGTH=326
          Length = 326

 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 75/175 (42%), Positives = 107/175 (61%), Gaps = 20/175 (11%)

Query: 1   MSSVNEKLDELKHQAAQKDSLLKSTQQQLFDVKLLNGVESVSWKNARYRFPQMMLADNQA 60
           ++ + EKL+      A+KD L+KS Q QL D K+                    LAD QA
Sbjct: 170 VNEIQEKLEATNRLVAEKDMLIKSMQLQLSDTKI-------------------KLADKQA 210

Query: 61  ALEKIQWESMISNKKAEKLQEEIGSMQGDLSSFTLLLEGLTITDNAEYIDDYDIKPYVHS 120
           ALEK QWE+  +  +A KLQE++ +++GD+S+FT + E L  TD+ +   DYD  PY   
Sbjct: 211 ALEKTQWEAKTTGTRAIKLQEQLDAVEGDISTFTRVFETLAKTDSKKPDRDYDAVPY-EF 269

Query: 121 NHLPSIDDLDEMEMHKIEEARKAYNVAVAYAKEKQDQESIAAAANARLHLQSILF 175
           +HLP +DD+DE ++ K+EEAR AY  AV  AKE++D+ES+  AA AR +LQS+ F
Sbjct: 270 DHLPYLDDVDETDLRKMEEARLAYVAAVNTAKEREDEESLVMAAQARAYLQSLAF 324