Miyakogusa Predicted Gene

Lj6g3v1887820.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1887820.1 tr|Q063U4|Q063U4_9SYNE Possible cobalt transport
protein OS=Synechococcus sp. BL107 GN=BL107_15845
P,33.59,1e-18,CbiQ,ABC/ECF transporter, transmembrane component;
seg,NULL,CUFF.60121.1
         (374 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G21580.1 | Symbols:  | cobalt ion transmembrane transporters ...   393   e-110

>AT3G21580.1 | Symbols:  | cobalt ion transmembrane transporters |
           chr3:7602009-7603720 REVERSE LENGTH=391
          Length = 391

 Score =  393 bits (1010), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/341 (57%), Positives = 242/341 (70%), Gaps = 3/341 (0%)

Query: 37  AANVRRKRCFTIRAS---KGQSVDWSQWLPTGSFAADKVFRLIAGATASPIGQFVSSPTT 93
           ++++  KR F +RA+    G++ +W   LP     A+ VFRLI+ AT SPIGQF+SSP T
Sbjct: 51  SSSLAAKRVFIVRATVDGDGKTGNWVNRLPIPGLGAENVFRLISSATGSPIGQFISSPVT 110

Query: 94  FLHSIDPRXXXXXXXXXXXXPSRSHIIMRFGLVIYLTLLSIWVLPRSTWTDQLGRVYLLS 153
           FLHS+DPR            P+R+++++R GLV+   LLSI VLPR  W DQL RV LLS
Sbjct: 111 FLHSVDPRIKLVWLLTLVVLPARANLVVRLGLVLCTALLSILVLPRQVWIDQLARVSLLS 170

Query: 154 GLLFITSGLGADGAPALVQLRTPPPAVTGLPNLPVSLTGYSYLISKLGPLTFTRKGLSVA 213
           G+LFIT GLG+DGAP ++Q RTPP ++T LPNLP+SL+GYSY++ KLGPL FTRKGLSV 
Sbjct: 171 GILFITLGLGSDGAPPMLQSRTPPSSITSLPNLPMSLSGYSYMLLKLGPLQFTRKGLSVG 230

Query: 214 STVACLTFTVFQSASLCLTTTTPEQLAFALRWFMLPLRYXXXXXXXXXXXXXXXXXXXXX 273
           ST ACLTF +FQSAS+CL TTTPEQLA ALRWF+ PL Y                     
Sbjct: 231 STAACLTFIIFQSASICLATTTPEQLALALRWFLFPLTYIGVPVSEIILTLLLSLRFINL 290

Query: 274 XFDEVRNLAMGIVSRRVNWKQLTVMETIDIFFNYFRRIFKNIFSHAEQISQAMIVRGFKG 333
            FDEVR++++GIVSRRVNW+QLTV+ET+DIF ++ RRIFKNIF HAEQISQAMIVRGF+G
Sbjct: 291 VFDEVRSVSLGIVSRRVNWQQLTVLETLDIFASFIRRIFKNIFRHAEQISQAMIVRGFRG 350

Query: 334 DVGSQKIYFLSEPSFGMADIICLLCLKIVIGAALLSEYYFV 374
           +  S KIYF S  S   AD   +LCL  VI  ALLSEY+ V
Sbjct: 351 ESSSHKIYFFSGSSNKFADFASVLCLIGVISTALLSEYFLV 391