Miyakogusa Predicted Gene

Lj6g3v1887600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1887600.1 Non Chatacterized Hit- tr|B9T8Q0|B9T8Q0_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,61.19,6e-17,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NULL,CUFF.60086.1
         (578 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23590.1 | Symbols: RFR1, MED33A | REF4-related 1 | chr3:8467...   616   e-176
AT2G48110.1 | Symbols: REF4, MED33B | reduced epidermal fluoresc...   398   e-111

>AT3G23590.1 | Symbols: RFR1, MED33A | REF4-related 1 |
           chr3:8467638-8473469 FORWARD LENGTH=1309
          Length = 1309

 Score =  616 bits (1588), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 310/572 (54%), Positives = 400/572 (69%), Gaps = 19/572 (3%)

Query: 1   MEVSAALSNWSKAAELTKAAQEKGSDPLVWAIQMYSNLNSAGESLPSPELAEFLVSYICW 60
           M V    + W    ELTK AQE   DP +WA Q+ SNL      LPS ELAE +VSYICW
Sbjct: 1   MVVPGRRTVWDCVIELTKMAQENCVDPRLWASQLSSNLKFFAVELPSTELAEVIVSYICW 60

Query: 61  ENNVPILWKFLDKALMLKIVPPMXXXXXXXXRVIPCRHVQPAAYRLYLELLKRHAFDLQY 120
           +NNVPI+WKFL++A+ LK+V P+        RV+P R  Q AAYR+YLELLKR+ F ++ 
Sbjct: 61  DNNVPIVWKFLERAMALKLVSPLVVLALLADRVVPTRSTQQAAYRIYLELLKRNMFTIKD 120

Query: 121 QINRPDYEKVMKSIDDVLHLSDIFGMSHSEPGILVVEFIFSIVWQLLDASLDDEGLLEFI 180
            I+ P Y+KVM S+ ++L LS++F +  S+PG+L+VEF+F +V QLLDA+L DEGLLE  
Sbjct: 121 HISGPHYQKVMISVSNILRLSELFDLDTSKPGVLLVEFVFKMVSQLLDAALSDEGLLELS 180

Query: 181 PEKNSRWAILYQEMDLDRHDNYSDKKAEQLEILQNANTLMAVEIIGQFLQDKKSSRLLYL 240
            + +S+W +  Q+M++D  + Y++K    LE LQ+ NT+MA+E+I +FL++   +RLLYL
Sbjct: 181 QDSSSQWLVKSQDMEIDAPERYNEKTG-SLEKLQSLNTIMAIELIAEFLRNTVIARLLYL 239

Query: 241 ARRNLPAHWLSFVQRLQLLGTNSLALRKSRILCPEALSHLTSDTCMALPRECKTNSQQKF 300
              N  + W  FVQ++QLLG NS AL+ S++L    L  L S+       + K  S +K 
Sbjct: 240 VSSNRASKWHEFVQKVQLLGENSSALKHSKVLNSGDLLQLISNRRFGYSYDSKVTSARKS 299

Query: 301 QSVMAFEYLSSSASLCHGASHSALWIPLDLMLEDAMDGYQVSATSSIEIISGLIKTLRAI 360
            +++ F  LSS A LCHGAS S+LW+PLDL+ EDAMDGYQV+ TS+IEII+GL KTL+ I
Sbjct: 300 NAIVDFGSLSSYAGLCHGASLSSLWLPLDLVFEDAMDGYQVNPTSAIEIITGLAKTLKEI 359

Query: 361 NGTSWHDTFLGLWLATLRLVQRERDPIEGPMPHLDTRLFMLFCILPLVVANLIEEEERTP 420
           NG++WHDTFLGLW+A LRLVQRERDPIEGP+P LDTRL M  CI+PLVVANLIEE +   
Sbjct: 360 NGSTWHDTFLGLWIAALRLVQRERDPIEGPIPRLDTRLCMSLCIVPLVVANLIEEGKYES 419

Query: 421 VDEKDNGPTDHWKEKMVPGKCRNDLVSSLQVLGDYQSLLLPPQSVVXXXXXXXXXXMLFV 480
           V E                K R+DLV+SLQVLGD+  LL PP+ VV          +LF+
Sbjct: 420 VME----------------KLRDDLVTSLQVLGDFPGLLAPPKCVVSAANKAATKAILFL 463

Query: 481 SG--IGNAYFDCLTMTEMPVNCSGNMRHLIVEACIARNLLDTSAYLWPGYVSGRINQIPQ 538
           SG  +G + FD + M +MPVNCSGNMRHLIVEACIARN+LD SAY WPGYV+GRINQIPQ
Sbjct: 464 SGGNVGKSCFDVINMKDMPVNCSGNMRHLIVEACIARNILDMSAYSWPGYVNGRINQIPQ 523

Query: 539 CMPAQVPGWSSFMKGAPLTSVMVNALVSSPAT 570
            +P +VP WSSF+KGAPL + MVN LVS PA+
Sbjct: 524 SLPNEVPCWSSFVKGAPLNAAMVNTLVSVPAS 555


>AT2G48110.1 | Symbols: REF4, MED33B | reduced epidermal
           fluorescence 4 | chr2:19673370-19679494 FORWARD
           LENGTH=1275
          Length = 1275

 Score =  398 bits (1022), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 245/585 (41%), Positives = 331/585 (56%), Gaps = 97/585 (16%)

Query: 8   SNWSKAAELTKAAQEKGSDPLVWAIQMYSNLNSAGESLPSPELAEFLVSYICWENNVPIL 67
           S W     L ++AQEK  DPL WA+Q+   L SAG SLPSP+LA+FLV++I WEN+ P+ 
Sbjct: 9   SLWESVTSLIRSAQEKNVDPLHWALQLRLTLASAGISLPSPDLAQFLVTHIFWENHSPLS 68

Query: 68  WKFLDKALMLKIVPPMXXXXXXXXRVIPCRHVQPAAYRLYLELLKRHAFDLQYQINRPDY 127
           WK L+KA+ + IVPP+        RVIP R + PAAYRLY+ELLKRHAF     I  P Y
Sbjct: 69  WKLLEKAISVNIVPPLLVLALLSPRVIPNRKLHPAAYRLYMELLKRHAFSFMPLIRAPGY 128

Query: 128 EKVMKSIDDVLHLSDIFGMSHSEPGILVVEFIFSIVWQLLDASLDDEGLLEFIPEKNSRW 187
            K M SIDD+LHLS+ FG+   EPG +++ F+FSIVW+LLDASLD+EGLLE    K S+W
Sbjct: 129 HKTMNSIDDILHLSETFGVQDQEPGSILLAFVFSIVWELLDASLDEEGLLELTSNKRSKW 188

Query: 188 AILYQEMDLDRHDNYSDKKAEQLEILQNANTLMAVEIIGQFLQDKKSSRLLYLARRNLPA 247
                +MDLD  +N S K+ E  + L+ ANT MA+E+I +FLQ+K +SR+L+LA +N+  
Sbjct: 189 PSSPHDMDLDGLEN-SVKRNENHDALEKANTEMAIELIQEFLQNKVTSRILHLASQNM-- 245

Query: 248 HWLSFVQRLQLLGTNSLALRKSRILCPEALSHLTSDTCMALPRECKTNSQQKFQSVMAFE 307
                                                      E KT  + +F +++   
Sbjct: 246 -------------------------------------------ESKTIPRGEFHAIV--- 259

Query: 308 YLSSSASLCHGASHSALWIPLDLMLEDAMDGYQVSATSSIEIISGLIKTLRAINGTSWHD 367
              SS S     S SALW+P+DL  ED MDG Q +A S++E ++GL+K L+A N TSWHD
Sbjct: 260 ---SSGSKLALTSDSALWLPIDLFFEDIMDGTQAAAASAVENLTGLVKALQAANSTSWHD 316

Query: 368 TFLGLWLATLRLVQR-------------------ERDPIEGPMPHLDTRLFMLFCILPLV 408
            FL LWLA LRLVQR                   ERDPIEGP+P  DT L +L  + PL 
Sbjct: 317 AFLALWLAALRLVQRENLCLRYCFFMHMLEILSEERDPIEGPVPRTDTFLCVLLSVTPLA 376

Query: 409 VANLIEEEERTPVDEKDNGPTDHWKEKMVPGKCRNDLVSSLQVLGDYQSLLLPPQSVVXX 468
           VAN+IEEEE   +D+  + P++ WKEK   GKCR  L++SLQ LGDY+SLL PP+SV   
Sbjct: 377 VANIIEEEESQWIDQTSSSPSNQWKEK--KGKCRQGLINSLQQLGDYESLLTPPRSVQSV 434

Query: 469 XXXXXXXXMLFVSGI--GNAYFDCLTMTEMPVNCSGNMRHLIVEACIAR-NLLDTSAYLW 525
                   ++F+SGI   N  ++  +M+E    C           C  R +L     ++ 
Sbjct: 435 ANQAAAKAIMFISGITNSNGSYENTSMSESASGC-----------CKVRFSLFTLKMFVV 483

Query: 526 PGYVSGRINQIPQCMPAQVPGWSSFMKGAPLTSVMVNALVSSPAT 570
            G            +   +  WS  MKG+PLT  + N+L+++PA+
Sbjct: 484 MGVY----------LLCNISCWSLVMKGSPLTPSLTNSLITTPAS 518