Miyakogusa Predicted Gene
- Lj6g3v1883480.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1883480.1 Non Chatacterized Hit- tr|I3T392|I3T392_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,87.55,0,seg,NULL; UNCHARACTERIZED,NULL; SNARE_assoc,SNARE
associated Golgi protein,CUFF.60159.1
(274 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G19070.1 | Symbols: | SNARE associated Golgi protein family ... 345 3e-95
AT1G03260.1 | Symbols: | SNARE associated Golgi protein family ... 309 2e-84
AT1G22850.1 | Symbols: | SNARE associated Golgi protein family ... 76 2e-14
AT2G02370.2 | Symbols: | SNARE associated Golgi protein family ... 50 2e-06
AT2G02370.1 | Symbols: | SNARE associated Golgi protein family ... 50 2e-06
>AT5G19070.1 | Symbols: | SNARE associated Golgi protein family |
chr5:6375569-6377470 FORWARD LENGTH=280
Length = 280
Score = 345 bits (884), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 178/282 (63%), Positives = 207/282 (73%), Gaps = 12/282 (4%)
Query: 1 MAFSWASALRITLFXXXXXXXXXXCFTLPVEKMMKDFLLWVDHDLGPWGPLVLAVAYIPL 60
MAF+W SALRI++ C+ LPVEK++KDFLLWV+ DLGPWGP LAVAYIPL
Sbjct: 1 MAFTWGSALRISVLLILVAAIVLACYFLPVEKLLKDFLLWVEQDLGPWGPFALAVAYIPL 60
Query: 61 TVLAVPASVLTLGGGYLFGLPVGFVADSIGATLGAGAAFILGRTIGRSFVVSKLKDYPQF 120
TVLAVPASVLTLGGGYLFGLP+GFVADS+GATLG+GAAF+LGRTIG+ FVV+KLKDYPQF
Sbjct: 61 TVLAVPASVLTLGGGYLFGLPIGFVADSVGATLGSGAAFLLGRTIGKPFVVAKLKDYPQF 120
Query: 121 RSVAIAIRRSGFKIXXXXXXXXXXXFNMLNYLLSVTPVSIGEYMLASWLGMMPITLALVY 180
+SVA+AI +SGFKI F+MLNYLLSVTP+ +G Y+L+SWLGMMPITLALVY
Sbjct: 121 QSVALAIEKSGFKICLLLRLAPLLPFSMLNYLLSVTPIRLGPYLLSSWLGMMPITLALVY 180
Query: 181 VGTTLKDLSDVTHGWSEFSKTRWAFIXXXXXXXXXXXXXXXXXAKSALDKALAE-----N 235
VGTTLKDLSDVTH WSEFS RWAF+ AK AL KALAE N
Sbjct: 181 VGTTLKDLSDVTHKWSEFSPGRWAFLISSLVISVILMVCVTKVAKDALRKALAEHGGDMN 240
Query: 236 EDIDGLTSSPELPIVAETSSDLSHPLIIKID---PTDE-NHE 273
E + L PEL + + S+DL+ PL+IKID P D+ NH
Sbjct: 241 EAVAAL---PELTVTDDASTDLNEPLLIKIDAQQPQDQVNHS 279
>AT1G03260.1 | Symbols: | SNARE associated Golgi protein family |
chr1:795678-798102 REVERSE LENGTH=274
Length = 274
Score = 309 bits (791), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 161/272 (59%), Positives = 196/272 (72%), Gaps = 5/272 (1%)
Query: 1 MAFSWASALRITLFXXXXXXXXXXCFTLPVEKMMKDFLLWVDHDLGPWGPLVLAVAYIPL 60
M+F+ S RI + LPVE+ +KDFLLW+ DLGP+GPL LA+AYIPL
Sbjct: 4 MSFT-PSTFRIAISLLLLVAIVSAVIFLPVEQKLKDFLLWIKEDLGPFGPLALALAYIPL 62
Query: 61 TVLAVPASVLTLGGGYLFGLPVGFVADSIGATLGAGAAFILGRTIGRSFVVSKLKDYPQF 120
T++AVPASVLTLGGGYLFGLPVGFVADS+GATLGA AAF+LGRTIG+S+V SK+K YP+F
Sbjct: 63 TIVAVPASVLTLGGGYLFGLPVGFVADSLGATLGATAAFLLGRTIGKSYVTSKIKHYPKF 122
Query: 121 RSVAIAIRRSGFKIXXXXXXXXXXXFNMLNYLLSVTPVSIGEYMLASWLGMMPITLALVY 180
++V++AI++SGFKI FNMLNYLLSVTPV +GEYMLA+WLGMMPIT ALVY
Sbjct: 123 QAVSVAIQKSGFKIVLLLRVVPILPFNMLNYLLSVTPVRLGEYMLATWLGMMPITFALVY 182
Query: 181 VGTTLKDLSDVTHGWSEFSKTRWAFIXXXXXXXXXXXXXXXXXAKSALDKALAEN-EDID 239
VGTTLKDLSD+THGW E S RW + AKS+LDKALAEN ++D
Sbjct: 183 VGTTLKDLSDITHGWHEVSVFRWVIMMVGVALAVILIICITRVAKSSLDKALAENGTELD 242
Query: 240 GLTS--SPELPIVAETSSDLSHPLIIKIDPTD 269
G + + LPI AE DL PL+I+IDP++
Sbjct: 243 GKKNDDASVLPI-AEPPPDLQEPLVIRIDPSN 273
>AT1G22850.1 | Symbols: | SNARE associated Golgi protein family |
chr1:8080671-8082816 REVERSE LENGTH=344
Length = 344
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 1/153 (0%)
Query: 30 VEKMMKDFLLWVDHDLGPWGPLVLAVAYIPLTVLAVPASVLTLGGGYLFGLPVGFVADSI 89
+ + F +++ G G + Y L +LA+PA LT+ G LFG +G + SI
Sbjct: 134 INTFLTQFSTYIE-GYGTAGYALFIAVYAGLEILAIPALPLTMSAGLLFGPLIGTIIVSI 192
Query: 90 GATLGAGAAFILGRTIGRSFVVSKLKDYPQFRSVAIAIRRSGFKIXXXXXXXXXXXFNML 149
T+ A AF++ R R ++ ++D +F ++ AI +GF++ F++
Sbjct: 193 SGTMAASVAFLIARYFARERILKLVEDNKKFLAIDKAIGENGFRVVTLLRLSPLLPFSLG 252
Query: 150 NYLLSVTPVSIGEYMLASWLGMMPITLALVYVG 182
NYL +T V Y+L SWLGM+P + A V G
Sbjct: 253 NYLYGLTSVKFVPYVLGSWLGMLPGSWAYVSAG 285
>AT2G02370.2 | Symbols: | SNARE associated Golgi protein family |
chr2:621841-623084 FORWARD LENGTH=320
Length = 320
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 91/247 (36%), Gaps = 35/247 (14%)
Query: 31 EKMMKDFLLWVDHDLG-PWGPLVLAVAYIPLTVLAVPASVLTLGGGYLFGLPVGFVADSI 89
+K++ L W G P +VL V+ V +P+ G +FG +GFV +
Sbjct: 82 QKVLIPILQWEATAFGRPMLAIVLVVSLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMV 141
Query: 90 GATLGAGAAFILGRTIGRSFVVSKLKDYP----------------QFRSVAIAIRRSGFK 133
G T+G +++G + R + LK +P QFR VAI R S F
Sbjct: 142 GTTIGMVLPYLIG-LMFRDRLHQWLKRWPRQAAVLRLAAEGSWFHQFRVVAI-FRVSPFP 199
Query: 134 IXXXXXXXXXXXFNMLNYLLSVTPVSIGEYMLASWLGMMPITLALVYVGTTLKDLSDVTH 193
+ + NY + VT + Y S GM+P +Y G ++ +DV +
Sbjct: 200 ------------YTIFNYAIVVTSMRFWPYFFGSIAGMIPEAFIYIYSGRLIRTFADVQY 247
Query: 194 GWSEFSKTRWAFIXXXXXXXXXXXXXXXXXAKSAL----DKALAENEDIDGLTSSPELPI 249
G + + AK AL + E+E++ E+
Sbjct: 248 GHQRLTTVEIVYNVISLVIAVVTTVAFTVYAKRALRELQNAEANEDEEVQVRKVRFEMKN 307
Query: 250 VAETSSD 256
V + D
Sbjct: 308 VVQHEED 314
>AT2G02370.1 | Symbols: | SNARE associated Golgi protein family |
chr2:621841-623084 FORWARD LENGTH=320
Length = 320
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 91/247 (36%), Gaps = 35/247 (14%)
Query: 31 EKMMKDFLLWVDHDLG-PWGPLVLAVAYIPLTVLAVPASVLTLGGGYLFGLPVGFVADSI 89
+K++ L W G P +VL V+ V +P+ G +FG +GFV +
Sbjct: 82 QKVLIPILQWEATAFGRPMLAIVLVVSLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMV 141
Query: 90 GATLGAGAAFILGRTIGRSFVVSKLKDYP----------------QFRSVAIAIRRSGFK 133
G T+G +++G + R + LK +P QFR VAI R S F
Sbjct: 142 GTTIGMVLPYLIG-LMFRDRLHQWLKRWPRQAAVLRLAAEGSWFHQFRVVAI-FRVSPFP 199
Query: 134 IXXXXXXXXXXXFNMLNYLLSVTPVSIGEYMLASWLGMMPITLALVYVGTTLKDLSDVTH 193
+ + NY + VT + Y S GM+P +Y G ++ +DV +
Sbjct: 200 ------------YTIFNYAIVVTSMRFWPYFFGSIAGMIPEAFIYIYSGRLIRTFADVQY 247
Query: 194 GWSEFSKTRWAFIXXXXXXXXXXXXXXXXXAKSAL----DKALAENEDIDGLTSSPELPI 249
G + + AK AL + E+E++ E+
Sbjct: 248 GHQRLTTVEIVYNVISLVIAVVTTVAFTVYAKRALRELQNAEANEDEEVQVRKVRFEMKN 307
Query: 250 VAETSSD 256
V + D
Sbjct: 308 VVQHEED 314