Miyakogusa Predicted Gene

Lj6g3v1883480.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1883480.1 Non Chatacterized Hit- tr|I3T392|I3T392_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,87.55,0,seg,NULL; UNCHARACTERIZED,NULL; SNARE_assoc,SNARE
associated Golgi protein,CUFF.60159.1
         (274 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G19070.1 | Symbols:  | SNARE associated Golgi protein family ...   345   3e-95
AT1G03260.1 | Symbols:  | SNARE associated Golgi protein family ...   309   2e-84
AT1G22850.1 | Symbols:  | SNARE associated Golgi protein family ...    76   2e-14
AT2G02370.2 | Symbols:  | SNARE associated Golgi protein family ...    50   2e-06
AT2G02370.1 | Symbols:  | SNARE associated Golgi protein family ...    50   2e-06

>AT5G19070.1 | Symbols:  | SNARE associated Golgi protein family |
           chr5:6375569-6377470 FORWARD LENGTH=280
          Length = 280

 Score =  345 bits (884), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 178/282 (63%), Positives = 207/282 (73%), Gaps = 12/282 (4%)

Query: 1   MAFSWASALRITLFXXXXXXXXXXCFTLPVEKMMKDFLLWVDHDLGPWGPLVLAVAYIPL 60
           MAF+W SALRI++           C+ LPVEK++KDFLLWV+ DLGPWGP  LAVAYIPL
Sbjct: 1   MAFTWGSALRISVLLILVAAIVLACYFLPVEKLLKDFLLWVEQDLGPWGPFALAVAYIPL 60

Query: 61  TVLAVPASVLTLGGGYLFGLPVGFVADSIGATLGAGAAFILGRTIGRSFVVSKLKDYPQF 120
           TVLAVPASVLTLGGGYLFGLP+GFVADS+GATLG+GAAF+LGRTIG+ FVV+KLKDYPQF
Sbjct: 61  TVLAVPASVLTLGGGYLFGLPIGFVADSVGATLGSGAAFLLGRTIGKPFVVAKLKDYPQF 120

Query: 121 RSVAIAIRRSGFKIXXXXXXXXXXXFNMLNYLLSVTPVSIGEYMLASWLGMMPITLALVY 180
           +SVA+AI +SGFKI           F+MLNYLLSVTP+ +G Y+L+SWLGMMPITLALVY
Sbjct: 121 QSVALAIEKSGFKICLLLRLAPLLPFSMLNYLLSVTPIRLGPYLLSSWLGMMPITLALVY 180

Query: 181 VGTTLKDLSDVTHGWSEFSKTRWAFIXXXXXXXXXXXXXXXXXAKSALDKALAE-----N 235
           VGTTLKDLSDVTH WSEFS  RWAF+                 AK AL KALAE     N
Sbjct: 181 VGTTLKDLSDVTHKWSEFSPGRWAFLISSLVISVILMVCVTKVAKDALRKALAEHGGDMN 240

Query: 236 EDIDGLTSSPELPIVAETSSDLSHPLIIKID---PTDE-NHE 273
           E +  L   PEL +  + S+DL+ PL+IKID   P D+ NH 
Sbjct: 241 EAVAAL---PELTVTDDASTDLNEPLLIKIDAQQPQDQVNHS 279


>AT1G03260.1 | Symbols:  | SNARE associated Golgi protein family |
           chr1:795678-798102 REVERSE LENGTH=274
          Length = 274

 Score =  309 bits (791), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 161/272 (59%), Positives = 196/272 (72%), Gaps = 5/272 (1%)

Query: 1   MAFSWASALRITLFXXXXXXXXXXCFTLPVEKMMKDFLLWVDHDLGPWGPLVLAVAYIPL 60
           M+F+  S  RI +              LPVE+ +KDFLLW+  DLGP+GPL LA+AYIPL
Sbjct: 4   MSFT-PSTFRIAISLLLLVAIVSAVIFLPVEQKLKDFLLWIKEDLGPFGPLALALAYIPL 62

Query: 61  TVLAVPASVLTLGGGYLFGLPVGFVADSIGATLGAGAAFILGRTIGRSFVVSKLKDYPQF 120
           T++AVPASVLTLGGGYLFGLPVGFVADS+GATLGA AAF+LGRTIG+S+V SK+K YP+F
Sbjct: 63  TIVAVPASVLTLGGGYLFGLPVGFVADSLGATLGATAAFLLGRTIGKSYVTSKIKHYPKF 122

Query: 121 RSVAIAIRRSGFKIXXXXXXXXXXXFNMLNYLLSVTPVSIGEYMLASWLGMMPITLALVY 180
           ++V++AI++SGFKI           FNMLNYLLSVTPV +GEYMLA+WLGMMPIT ALVY
Sbjct: 123 QAVSVAIQKSGFKIVLLLRVVPILPFNMLNYLLSVTPVRLGEYMLATWLGMMPITFALVY 182

Query: 181 VGTTLKDLSDVTHGWSEFSKTRWAFIXXXXXXXXXXXXXXXXXAKSALDKALAEN-EDID 239
           VGTTLKDLSD+THGW E S  RW  +                 AKS+LDKALAEN  ++D
Sbjct: 183 VGTTLKDLSDITHGWHEVSVFRWVIMMVGVALAVILIICITRVAKSSLDKALAENGTELD 242

Query: 240 GLTS--SPELPIVAETSSDLSHPLIIKIDPTD 269
           G  +  +  LPI AE   DL  PL+I+IDP++
Sbjct: 243 GKKNDDASVLPI-AEPPPDLQEPLVIRIDPSN 273


>AT1G22850.1 | Symbols:  | SNARE associated Golgi protein family |
           chr1:8080671-8082816 REVERSE LENGTH=344
          Length = 344

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 1/153 (0%)

Query: 30  VEKMMKDFLLWVDHDLGPWGPLVLAVAYIPLTVLAVPASVLTLGGGYLFGLPVGFVADSI 89
           +   +  F  +++   G  G  +    Y  L +LA+PA  LT+  G LFG  +G +  SI
Sbjct: 134 INTFLTQFSTYIE-GYGTAGYALFIAVYAGLEILAIPALPLTMSAGLLFGPLIGTIIVSI 192

Query: 90  GATLGAGAAFILGRTIGRSFVVSKLKDYPQFRSVAIAIRRSGFKIXXXXXXXXXXXFNML 149
             T+ A  AF++ R   R  ++  ++D  +F ++  AI  +GF++           F++ 
Sbjct: 193 SGTMAASVAFLIARYFARERILKLVEDNKKFLAIDKAIGENGFRVVTLLRLSPLLPFSLG 252

Query: 150 NYLLSVTPVSIGEYMLASWLGMMPITLALVYVG 182
           NYL  +T V    Y+L SWLGM+P + A V  G
Sbjct: 253 NYLYGLTSVKFVPYVLGSWLGMLPGSWAYVSAG 285


>AT2G02370.2 | Symbols:  | SNARE associated Golgi protein family |
           chr2:621841-623084 FORWARD LENGTH=320
          Length = 320

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 91/247 (36%), Gaps = 35/247 (14%)

Query: 31  EKMMKDFLLWVDHDLG-PWGPLVLAVAYIPLTVLAVPASVLTLGGGYLFGLPVGFVADSI 89
           +K++   L W     G P   +VL V+     V  +P+       G +FG  +GFV   +
Sbjct: 82  QKVLIPILQWEATAFGRPMLAIVLVVSLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMV 141

Query: 90  GATLGAGAAFILGRTIGRSFVVSKLKDYP----------------QFRSVAIAIRRSGFK 133
           G T+G    +++G  + R  +   LK +P                QFR VAI  R S F 
Sbjct: 142 GTTIGMVLPYLIG-LMFRDRLHQWLKRWPRQAAVLRLAAEGSWFHQFRVVAI-FRVSPFP 199

Query: 134 IXXXXXXXXXXXFNMLNYLLSVTPVSIGEYMLASWLGMMPITLALVYVGTTLKDLSDVTH 193
                       + + NY + VT +    Y   S  GM+P     +Y G  ++  +DV +
Sbjct: 200 ------------YTIFNYAIVVTSMRFWPYFFGSIAGMIPEAFIYIYSGRLIRTFADVQY 247

Query: 194 GWSEFSKTRWAFIXXXXXXXXXXXXXXXXXAKSAL----DKALAENEDIDGLTSSPELPI 249
           G    +     +                  AK AL    +    E+E++       E+  
Sbjct: 248 GHQRLTTVEIVYNVISLVIAVVTTVAFTVYAKRALRELQNAEANEDEEVQVRKVRFEMKN 307

Query: 250 VAETSSD 256
           V +   D
Sbjct: 308 VVQHEED 314


>AT2G02370.1 | Symbols:  | SNARE associated Golgi protein family |
           chr2:621841-623084 FORWARD LENGTH=320
          Length = 320

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 91/247 (36%), Gaps = 35/247 (14%)

Query: 31  EKMMKDFLLWVDHDLG-PWGPLVLAVAYIPLTVLAVPASVLTLGGGYLFGLPVGFVADSI 89
           +K++   L W     G P   +VL V+     V  +P+       G +FG  +GFV   +
Sbjct: 82  QKVLIPILQWEATAFGRPMLAIVLVVSLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMV 141

Query: 90  GATLGAGAAFILGRTIGRSFVVSKLKDYP----------------QFRSVAIAIRRSGFK 133
           G T+G    +++G  + R  +   LK +P                QFR VAI  R S F 
Sbjct: 142 GTTIGMVLPYLIG-LMFRDRLHQWLKRWPRQAAVLRLAAEGSWFHQFRVVAI-FRVSPFP 199

Query: 134 IXXXXXXXXXXXFNMLNYLLSVTPVSIGEYMLASWLGMMPITLALVYVGTTLKDLSDVTH 193
                       + + NY + VT +    Y   S  GM+P     +Y G  ++  +DV +
Sbjct: 200 ------------YTIFNYAIVVTSMRFWPYFFGSIAGMIPEAFIYIYSGRLIRTFADVQY 247

Query: 194 GWSEFSKTRWAFIXXXXXXXXXXXXXXXXXAKSAL----DKALAENEDIDGLTSSPELPI 249
           G    +     +                  AK AL    +    E+E++       E+  
Sbjct: 248 GHQRLTTVEIVYNVISLVIAVVTTVAFTVYAKRALRELQNAEANEDEEVQVRKVRFEMKN 307

Query: 250 VAETSSD 256
           V +   D
Sbjct: 308 VVQHEED 314