Miyakogusa Predicted Gene

Lj6g3v1880080.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1880080.2 tr|C7J964|C7J964_ORYSJ Os11g0572500 protein
OS=Oryza sativa subsp. japonica GN=Os11g0572500 PE=4
SV=,57.89,8e-18,seg,NULL; Ring finger,Zinc finger, RING-type;
OS04G0579200 PROTEIN,NULL; RING FINGER PROTEIN 11 (SID,CUFF.60042.2
         (264 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14220.1 | Symbols: RHF1A | RING-H2 group F1A | chr4:8196012-...   127   9e-30
AT5G22000.2 | Symbols: RHF2A | RING-H2 group F2A | chr5:7277436-...   111   6e-25
AT5G22000.3 | Symbols: RHF2A | RING-H2 group F2A | chr5:7277436-...   110   7e-25
AT5G22000.1 | Symbols: RHF2A | RING-H2 group F2A | chr5:7277436-...   110   7e-25
AT4G00335.2 | Symbols: RHB1A | RING-H2 finger B1A | chr4:146866-...    51   8e-07
AT4G00335.1 | Symbols: RHB1A | RING-H2 finger B1A | chr4:146866-...    51   8e-07
AT5G38895.3 | Symbols:  | RING/U-box superfamily protein | chr5:...    50   2e-06
AT5G38895.2 | Symbols:  | RING/U-box superfamily protein | chr5:...    50   2e-06
AT5G38895.1 | Symbols:  | RING/U-box superfamily protein | chr5:...    49   3e-06
AT4G00335.3 | Symbols: RHB1A | RING-H2 finger B1A | chr4:146866-...    49   4e-06
AT5G41350.1 | Symbols:  | RING/U-box superfamily protein | chr5:...    49   4e-06
AT4G23450.3 | Symbols: AIRP1, AtAIRP1 | RING/U-box superfamily p...    48   8e-06
AT4G23450.2 | Symbols: AIRP1, AtAIRP1 | RING/U-box superfamily p...    48   8e-06
AT4G23450.1 | Symbols: AIRP1, AtAIRP1 | RING/U-box superfamily p...    48   9e-06

>AT4G14220.1 | Symbols: RHF1A | RING-H2 group F1A |
           chr4:8196012-8198240 FORWARD LENGTH=371
          Length = 371

 Score =  127 bits (319), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 94/259 (36%), Positives = 123/259 (47%), Gaps = 44/259 (16%)

Query: 28  FNVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKDPASQELLAAVEAEKRLRS 87
           F + DPSTVT CKHEYHL CI+EWSQRSKECPICWQ   L+DPASQELLAAVE E+ L++
Sbjct: 53  FTLQDPSTVTSCKHEYHLQCIIEWSQRSKECPICWQLFVLRDPASQELLAAVEKERLLKT 112

Query: 88  RN--VNSSSFANSRLNDGH-DGSYSEECDFDEQIMQHLVAAASRARFVHRQERRXXXXXX 144
           RN   +S    +   +D H +   S+   FDEQ ++HL  AA R   + R++ +      
Sbjct: 113 RNISSSSPISIHHSHDDFHSEEEESQFSSFDEQFLRHLTEAAHRRCLLRRRDGQISSSLV 172

Query: 145 XXXXXXV----------------HVRREQPTPTTTSLSQGSSPTSG---VPSNVNNQPPT 185
                                  HV  +   P  +  S   SP SG   +P++ NN    
Sbjct: 173 SSSDPTTIHPTDLVNLYRLSAISHVEHQNSNPCPSPGSMTPSPVSGHSSIPADSNNG--- 229

Query: 186 PVVDEVARNTSPQTDVPFRARVIYSQTPPESARRLNTPEMFSFPEXXXXXXXXXXXXXXX 245
                              +R+    +P  S++   +PE  S PE               
Sbjct: 230 -------------------SRISPGPSPSRSSQSPKSPEASSLPEAIKSKLAAASAKYKE 270

Query: 246 XISKGTRGLKEKLLARNAS 264
            ISK  +GLKEKLLARN S
Sbjct: 271 SISKSKQGLKEKLLARNNS 289


>AT5G22000.2 | Symbols: RHF2A | RING-H2 group F2A |
           chr5:7277436-7279553 FORWARD LENGTH=375
          Length = 375

 Score =  111 bits (277), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 116/261 (44%), Gaps = 30/261 (11%)

Query: 28  FNVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKDPASQELLAAVEAEKRLRS 87
           F   DPST+T CKHEYHL CILEW QRS +CP+CWQS++LKDP SQELL AVE E+  R 
Sbjct: 40  FCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQSISLKDPTSQELLEAVEQERNFRF 99

Query: 88  R-NVNSSSFANSRLND---GHDGSYSEECDFDEQIMQHLVAAASRARFVHRQERRX-XXX 142
               N++ F +  L D    H     +  + +E+I+QHL AAA+  R  H   R      
Sbjct: 100 NPTRNATIFRHPTLGDFELQHLPVGVDNAEIEERIIQHLAAAAAMGRARHGVRREGHRSR 159

Query: 143 XXXXXXXXVHVRREQPTPTTTSLSQG----------SSPTSGVPSNV--------NNQPP 184
                     V   QP  ++                S   S +P N         N QPP
Sbjct: 160 SSSQGHQQFMVFSSQPNASSPPPHPPMPSSPSQRDESDTVSNLPHNALGEGSHQSNTQPP 219

Query: 185 TPVV-DEVARNTSPQTDVPFRARVIYSQTPPESARRLNTPEMFSFPEXXXXXXXXXXXXX 243
           T     +V+ + S     P       +Q+ P    R    E+ SF E             
Sbjct: 220 TSSHPRQVSPSASDSNSRPL------NQSSPSEQDRAGPSELQSFSESLKSRLNAVSTRY 273

Query: 244 XXXISKGTRGLKEKLLARNAS 264
              ISK TR  K++L +RN S
Sbjct: 274 KESISKNTRNWKDRLFSRNTS 294


>AT5G22000.3 | Symbols: RHF2A | RING-H2 group F2A |
           chr5:7277436-7279553 FORWARD LENGTH=375
          Length = 375

 Score =  110 bits (276), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 117/261 (44%), Gaps = 30/261 (11%)

Query: 28  FNVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKDPASQELLAAVEAEKRLR- 86
           F   DPST+T CKHEYHL CILEW QRS +CP+CWQS++LKDP SQELL AVE E+  R 
Sbjct: 40  FCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQSISLKDPTSQELLEAVEQERNFRF 99

Query: 87  SRNVNSSSFANSRLND---GHDGSYSEECDFDEQIMQHLVAAASRARFVHRQERRX-XXX 142
           +   N++ F +  L D    H     +  + +E+I+QHL AAA+  R  H   R      
Sbjct: 100 NPTRNATIFRHPTLGDFELQHLPVGVDNAEIEERIIQHLAAAAAMGRARHGVRREGHRSR 159

Query: 143 XXXXXXXXVHVRREQPTPTTTSLSQG----------SSPTSGVPSNV--------NNQPP 184
                     V   QP  ++                S   S +P N         N QPP
Sbjct: 160 SSSQGHQQFMVFSSQPNASSPPPHPPMPSSPSQRDESDTVSNLPHNALGEGSHQSNTQPP 219

Query: 185 TPVV-DEVARNTSPQTDVPFRARVIYSQTPPESARRLNTPEMFSFPEXXXXXXXXXXXXX 243
           T     +V+ + S     P       +Q+ P    R    E+ SF E             
Sbjct: 220 TSSHPRQVSPSASDSNSRPL------NQSSPSEQDRAGPSELQSFSESLKSRLNAVSTRY 273

Query: 244 XXXISKGTRGLKEKLLARNAS 264
              ISK TR  K++L +RN S
Sbjct: 274 KESISKNTRNWKDRLFSRNTS 294


>AT5G22000.1 | Symbols: RHF2A | RING-H2 group F2A |
           chr5:7277436-7279553 FORWARD LENGTH=375
          Length = 375

 Score =  110 bits (276), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 117/261 (44%), Gaps = 30/261 (11%)

Query: 28  FNVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKDPASQELLAAVEAEKRLR- 86
           F   DPST+T CKHEYHL CILEW QRS +CP+CWQS++LKDP SQELL AVE E+  R 
Sbjct: 40  FCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQSISLKDPTSQELLEAVEQERNFRF 99

Query: 87  SRNVNSSSFANSRLND---GHDGSYSEECDFDEQIMQHLVAAASRARFVHRQERRX-XXX 142
           +   N++ F +  L D    H     +  + +E+I+QHL AAA+  R  H   R      
Sbjct: 100 NPTRNATIFRHPTLGDFELQHLPVGVDNAEIEERIIQHLAAAAAMGRARHGVRREGHRSR 159

Query: 143 XXXXXXXXVHVRREQPTPTTTSLSQG----------SSPTSGVPSNV--------NNQPP 184
                     V   QP  ++                S   S +P N         N QPP
Sbjct: 160 SSSQGHQQFMVFSSQPNASSPPPHPPMPSSPSQRDESDTVSNLPHNALGEGSHQSNTQPP 219

Query: 185 TPVV-DEVARNTSPQTDVPFRARVIYSQTPPESARRLNTPEMFSFPEXXXXXXXXXXXXX 243
           T     +V+ + S     P       +Q+ P    R    E+ SF E             
Sbjct: 220 TSSHPRQVSPSASDSNSRPL------NQSSPSEQDRAGPSELQSFSESLKSRLNAVSTRY 273

Query: 244 XXXISKGTRGLKEKLLARNAS 264
              ISK TR  K++L +RN S
Sbjct: 274 KESISKNTRNWKDRLFSRNTS 294


>AT4G00335.2 | Symbols: RHB1A | RING-H2 finger B1A |
           chr4:146866-147962 FORWARD LENGTH=190
          Length = 190

 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 28/42 (66%)

Query: 28  FNVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKD 69
           ++V +P   T C+HE+HL C+LEW +RS  CPIC + +   D
Sbjct: 146 YDVENPRLTTKCEHEFHLSCLLEWIERSDRCPICDKEVVFDD 187


>AT4G00335.1 | Symbols: RHB1A | RING-H2 finger B1A |
           chr4:146866-147962 FORWARD LENGTH=190
          Length = 190

 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 28/42 (66%)

Query: 28  FNVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKD 69
           ++V +P   T C+HE+HL C+LEW +RS  CPIC + +   D
Sbjct: 146 YDVENPRLTTKCEHEFHLSCLLEWIERSDRCPICDKEVVFDD 187


>AT5G38895.3 | Symbols:  | RING/U-box superfamily protein |
           chr5:15571302-15573315 FORWARD LENGTH=326
          Length = 326

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 28  FNVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKD 69
           + + +P  +T C H +HL CI EW +RS+ CP+C + +A  +
Sbjct: 281 YTLENPKIITKCSHHFHLSCIYEWMERSETCPVCGKVMAFDE 322


>AT5G38895.2 | Symbols:  | RING/U-box superfamily protein |
           chr5:15571321-15573315 FORWARD LENGTH=296
          Length = 296

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 28  FNVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKD 69
           + + +P  +T C H +HL CI EW +RS+ CP+C + +A  +
Sbjct: 251 YTLENPKIITKCSHHFHLSCIYEWMERSETCPVCGKVMAFDE 292


>AT5G38895.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:15572084-15573315 FORWARD LENGTH=221
          Length = 221

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 28  FNVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKD 69
           + + +P  +T C H +HL CI EW +RS+ CP+C + +A  +
Sbjct: 176 YTLENPKIITKCSHHFHLSCIYEWMERSETCPVCGKVMAFDE 217


>AT4G00335.3 | Symbols: RHB1A | RING-H2 finger B1A |
           chr4:146866-147957 FORWARD LENGTH=189
          Length = 189

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 25/34 (73%)

Query: 28  FNVHDPSTVTCCKHEYHLHCILEWSQRSKECPIC 61
           ++V +P   T C+HE+HL C+LEW +RS  CPIC
Sbjct: 146 YDVENPRLTTKCEHEFHLSCLLEWIERSDRCPIC 179


>AT5G41350.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:16542026-16543092 REVERSE LENGTH=212
          Length = 212

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 26/40 (65%)

Query: 28  FNVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLAL 67
           +++ +P  V  C H +HL CILEW +RS+ CP+C + +  
Sbjct: 168 YDIENPKLVAKCDHHFHLACILEWMERSETCPVCNKEMVF 207


>AT4G23450.3 | Symbols: AIRP1, AtAIRP1 | RING/U-box superfamily
           protein | chr4:12241113-12242190 REVERSE LENGTH=208
          Length = 208

 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 28/42 (66%)

Query: 28  FNVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKD 69
           + + +P  +T C H++HL CIL W +RS+ CP+C + L L +
Sbjct: 166 YEIDNPKLLTKCGHDFHLACILAWMERSEACPVCDKELVLTE 207


>AT4G23450.2 | Symbols: AIRP1, AtAIRP1 | RING/U-box superfamily
           protein | chr4:12241113-12242190 REVERSE LENGTH=208
          Length = 208

 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 28/42 (66%)

Query: 28  FNVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKD 69
           + + +P  +T C H++HL CIL W +RS+ CP+C + L L +
Sbjct: 166 YEIDNPKLLTKCGHDFHLACILAWMERSEACPVCDKELVLTE 207


>AT4G23450.1 | Symbols: AIRP1, AtAIRP1 | RING/U-box superfamily
           protein | chr4:12241113-12241837 REVERSE LENGTH=153
          Length = 153

 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 28/42 (66%)

Query: 28  FNVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKD 69
           + + +P  +T C H++HL CIL W +RS+ CP+C + L L +
Sbjct: 111 YEIDNPKLLTKCGHDFHLACILAWMERSEACPVCDKELVLTE 152