Miyakogusa Predicted Gene

Lj6g3v1879930.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1879930.1 Non Chatacterized Hit- tr|E1Z2G6|E1Z2G6_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,37.5,0.0000000002,SUBFAMILY NOT NAMED,NULL; RNA
PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN,NULL; Pseudouridine
synthase,P,NODE_71804_length_1314_cov_9.027397.path2.1
         (161 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21770.1 | Symbols:  | Pseudouridine synthase family protein ...   242   6e-65

>AT4G21770.1 | Symbols:  | Pseudouridine synthase family protein |
           chr4:11564028-11566345 REVERSE LENGTH=472
          Length = 472

 Score =  242 bits (618), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 109/163 (66%), Positives = 133/163 (81%), Gaps = 3/163 (1%)

Query: 1   MRPVNTAPRLISEDFIKGWHRCQLEVLECRKVPWPTTVIQDKYCVEDCGWPSQDHAYECI 60
           MRP N APRL++ED I+GWH CQLEVLEC+K+PWP    + K+ +EDCGW S++ AYEC 
Sbjct: 310 MRPKNMAPRLVAEDSIQGWHLCQLEVLECKKIPWPDAATEKKHDIEDCGWTSKEFAYECT 369

Query: 61  INLLTGKTHQIRAQFSACKAPLIGDSMYMPAAMAEISNPGLNPFGKYKKDFSI-ESEEEI 119
           INLLTGKTHQIRAQ +AC APL+GDSMYMPAA+AE+ NP  NP+GK KK +++ E+++E 
Sbjct: 370 INLLTGKTHQIRAQLAACGAPLVGDSMYMPAAIAEMGNPDTNPYGKAKKHYTMEENQKET 429

Query: 120 AVINWIAQHGKEPSVVIGLQACQISWDDK--EHFYQAGSPWWR 160
           AV  WI +HGKEP V IGLQACQISWDD   EHFY+AG+PWWR
Sbjct: 430 AVAEWIDRHGKEPRVGIGLQACQISWDDDDGEHFYEAGTPWWR 472