Miyakogusa Predicted Gene

Lj6g3v1879920.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1879920.1 Non Chatacterized Hit- tr|E1Z2G6|E1Z2G6_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,33.5,2e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; RNA
PSEUDOURIDYLATE SYNTHASE FAMILY
PROTEIN,NULL,NODE_71802_length_816_cov_7.406863.path1.1
         (268 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21770.1 | Symbols:  | Pseudouridine synthase family protein ...   277   6e-75

>AT4G21770.1 | Symbols:  | Pseudouridine synthase family protein |
           chr4:11564028-11566345 REVERSE LENGTH=472
          Length = 472

 Score =  277 bits (708), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 131/194 (67%), Positives = 161/194 (82%), Gaps = 1/194 (0%)

Query: 75  YPKYDRLLPCPLHKSPPRIEHLVVSEGGPVL-EYICKSLDLPPLFVADLIQFGAVYYALV 133
           Y +Y+RL+PCP +  PPRIEH+VV E   ++ E+I K LDLPPL+VADLI+FGAV+YALV
Sbjct: 73  YHEYNRLMPCPAYNLPPRIEHMVVLEDDVLVSEFISKQLDLPPLYVADLIRFGAVHYALV 132

Query: 134 XXXXXXSATPEQMRIFKQVTEPSVLQKRTSIKGKTVQAAQKTFRITHGDQFVEPGTYLRV 193
                 +ATPE++ +F++VT PSVL+KR+SIKGKTV+ AQKTFR+TH +Q+ E GTYLRV
Sbjct: 133 CPKPPPTATPEEIILFEEVTSPSVLKKRSSIKGKTVREAQKTFRVTHTNQYAEAGTYLRV 192

Query: 194 HVHPKRFPRCYEIDWRSRVIAVAESYVVLDKPAGTSVGETRGNIEESCVTFATRALGLTT 253
           HVHPKR PRCYEIDW+SR++AV +SYV+LDKPAGT+VG T  NIEESC TFA+RAL L  
Sbjct: 193 HVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTTDNIEESCATFASRALDLPE 252

Query: 254 PLLTTHQIDNCTEG 267
           PL TTHQIDNCTEG
Sbjct: 253 PLKTTHQIDNCTEG 266