Miyakogusa Predicted Gene

Lj6g3v1878830.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1878830.1 Non Chatacterized Hit- tr|I3STV7|I3STV7_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,98.7,0,SUBFAMILY NOT NAMED,NULL; DER1-LIKE PROTEIN, DERLIN,Derlin;
DER1,Derlin; seg,NULL; Rhomboid-like,NUL,CUFF.60024.1
         (231 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G04860.1 | Symbols: DER2.2 | DERLIN-2.2 | chr4:2460135-246137...   392   e-109
AT4G21810.1 | Symbols: DER2.1 | DERLIN-2.1 | chr4:11575345-11577...   381   e-106
AT4G29330.1 | Symbols: DER1 | DERLIN-1 | chr4:14444937-14446952 ...   152   2e-37

>AT4G04860.1 | Symbols: DER2.2 | DERLIN-2.2 | chr4:2460135-2461378
           FORWARD LENGTH=244
          Length = 244

 Score =  392 bits (1006), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/218 (86%), Positives = 200/218 (91%)

Query: 1   MAQAVEEWYKQMPVITRSYLTAAVVTTIGCSLDIISPYHLYLNPRLVVKQYQFWRLVTNF 60
           MAQAVEEWYKQMP+ITRSYLTAAV+TT+GCSLDIISPY+LYLNP LVVKQYQ+WRLVTNF
Sbjct: 1   MAQAVEEWYKQMPIITRSYLTAAVITTVGCSLDIISPYNLYLNPTLVVKQYQYWRLVTNF 60

Query: 61  LYFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFFYMLLFGASVLTGIVLLGGMIPYL 120
           LYFRK            ARYCKLLEENSFRG+TADF YMLLFGASVLTGIVL+GGMIPYL
Sbjct: 61  LYFRKMDLDFMFHMFFLARYCKLLEENSFRGKTADFLYMLLFGASVLTGIVLIGGMIPYL 120

Query: 121 SESFAKIIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAW 180
           S SFAKIIFLSNSLTFMMVYVWSKQNP+IHMSFLGLFTFTAAYLPWVLLGFS+LVGASAW
Sbjct: 121 SASFAKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAW 180

Query: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSLIKALF 218
           VDLLGMIAGHAYYFL +VYPRMT RRPLKTPS +KALF
Sbjct: 181 VDLLGMIAGHAYYFLAEVYPRMTNRRPLKTPSFLKALF 218


>AT4G21810.1 | Symbols: DER2.1 | DERLIN-2.1 | chr4:11575345-11577003
           REVERSE LENGTH=244
          Length = 244

 Score =  381 bits (979), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/218 (85%), Positives = 197/218 (90%)

Query: 1   MAQAVEEWYKQMPVITRSYLTAAVVTTIGCSLDIISPYHLYLNPRLVVKQYQFWRLVTNF 60
           MAQAVEEWYKQMP+ITRSYLTAAVVTT+GCSL+IISPY+LYLNP LVVKQYQFWRLVTNF
Sbjct: 1   MAQAVEEWYKQMPIITRSYLTAAVVTTVGCSLEIISPYNLYLNPTLVVKQYQFWRLVTNF 60

Query: 61  LYFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFFYMLLFGASVLTGIVLLGGMIPYL 120
           LYFRK            ARYCKLLEENSFRG+TADF YMLLFGA+VLTGIVL+GGMIPYL
Sbjct: 61  LYFRKMDLDFLFHMFFLARYCKLLEENSFRGKTADFLYMLLFGATVLTGIVLIGGMIPYL 120

Query: 121 SESFAKIIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAW 180
           S SF+KIIFLSNSLTFMMVYVWSKQNP+IHMSFLGLFTFTAAYLPWVLLGFS+LVGASAW
Sbjct: 121 SVSFSKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAW 180

Query: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSLIKALF 218
            D LGMIAGHAYYFL  VYPRMT RRPLKTPS +KALF
Sbjct: 181 GDFLGMIAGHAYYFLAFVYPRMTDRRPLKTPSFLKALF 218


>AT4G29330.1 | Symbols: DER1 | DERLIN-1 | chr4:14444937-14446952
           FORWARD LENGTH=266
          Length = 266

 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 83/211 (39%), Positives = 120/211 (56%), Gaps = 9/211 (4%)

Query: 7   EWYKQMPVITRSYLTAAVVTTIGCSLDIISPYHLYLNPRLVVKQYQFWRLVTNFLYFRKX 66
           E+Y  +P IT++Y T    TT+   L +++P H+ L P LV+KQ+Q WRL+TN  +    
Sbjct: 6   EFYNSLPPITKAYGTLCFFTTVATQLGLVAPVHIALIPELVLKQFQIWRLITNLFFLGGF 65

Query: 67  XXXXXXXXXXXARYCKLLEENSFRGRTADFFYMLLFGASVLTGIVLLGGMIPYLSESFAK 126
                      ARY   LE+  F  RTADF +M++FG+  L    L+  +IP+    F  
Sbjct: 66  SINFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGSFTL----LVLSVIPFFWTPF-- 119

Query: 127 IIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM 186
              L  SL FM++Y+WS++ P  ++S  GL T  A YLPW +L   V+ G+    DLLG+
Sbjct: 120 ---LGVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDLLGI 176

Query: 187 IAGHAYYFLEDVYPRMTGRRPLKTPSLIKAL 217
           IAGH YYFL  ++P  TG+  LKTP  +  +
Sbjct: 177 IAGHLYYFLTVLHPLATGKNYLKTPKWVNKI 207