Miyakogusa Predicted Gene

Lj6g3v1878770.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1878770.1 Non Chatacterized Hit- tr|I1N005|I1N005_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,59.52,2e-18,
,CUFF.60020.1
         (110 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G11655.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    78   1e-15
AT4G04745.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    67   3e-12
AT4G21902.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    61   2e-10

>AT1G11655.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT4G21902.1); Has 22 Blast hits to 22 proteins in
           6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:3919338-3919679 FORWARD
           LENGTH=113
          Length = 113

 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 72/109 (66%), Gaps = 6/109 (5%)

Query: 1   MALSRKQFSYAKMDKEDPIELIHRRAQFLIHKLLEKAD--SRRKP--SCLRIRISKLKVK 56
           M L ++   Y+KMDKEDP E++ RRA+FLI+K L++AD  SRR P  S +R+++  LKVK
Sbjct: 1   MTLFKRPCLYSKMDKEDPEEVLSRRAKFLIYKTLQEADLISRRDPHSSFIRLKLYLLKVK 60

Query: 57  IGNRLRRLRKRILSGVSVARVGIQGHVVSQMKTVKRMFGRGRQSIISLP 105
           IG RL +LR+ ++S V     GI+ H  + ++ +K+MF  G  + +  P
Sbjct: 61  IGKRLAKLRRSVVSAVRFG--GIRKHSHNGVRALKKMFQGGATTGLPRP 107


>AT4G04745.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT4G21902.1); Has 32 Blast hits to 32 proteins in
           9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr4:2412863-2413303 REVERSE
           LENGTH=146
          Length = 146

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 71/125 (56%), Gaps = 25/125 (20%)

Query: 1   MALSRKQ--FSYAKMDKEDPIELIHRRAQFLIHKLLEKADS-------RRKPS--CLRIR 49
           MAL  K   + Y KM+KEDP ELIHRRAQFLI K+LE+ADS       RR+ S   + IR
Sbjct: 26  MALMVKNSPYEYTKMEKEDPQELIHRRAQFLIQKVLERADSKTRQHQQRRRSSGPLIMIR 85

Query: 50  ISKLKVKIGNRLRRLRKRILSGVSVARVGIQGHVVSQ-MKTVKRMFG-----RGRQSIIS 103
           +  ++++IG +LR+LRK            I  +++++ +K+ KR           ++I  
Sbjct: 86  VVGIRMRIGKKLRKLRK--------TNTCICNNLITRFLKSFKRFLCSSSSSSSSRTISD 137

Query: 104 LPPLM 108
           LPPL 
Sbjct: 138 LPPLF 142


>AT4G21902.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT4G04745.1);
           Has 30201 Blast hits to 17322 proteins in 780 species:
           Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
           3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
           2996 (source: NCBI BLink). | chr4:11619786-11620139
           FORWARD LENGTH=117
          Length = 117

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 72/119 (60%), Gaps = 17/119 (14%)

Query: 1   MALSRKQFSYAKMDKEDPIELIHRRAQFLIHKLLEKAD------SRRKPSCLRI---RIS 51
           MA+ +    Y K++KED  E+IHRRAQFLIHK+L++AD       +++ + +++   R+ 
Sbjct: 1   MAMMKNPNQYTKIEKEDLNEIIHRRAQFLIHKILQRADIETLRQQQKRNTTIKLFSFRVV 60

Query: 52  KLKVKIGNRLRRLRKRILSGVSVARVGIQGHVVSQ-MKTVKR-MFGRGRQSIISLPPLM 108
            +++KIG +LR+LRK      S   V   G ++ + +K+++R  F    ++  +LPPL 
Sbjct: 61  GIRMKIGKKLRKLRK------SCVMVDKNGDLIPRVLKSLRRYFFCSSPRNDSNLPPLF 113