Miyakogusa Predicted Gene

Lj6g3v1874690.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1874690.1 Non Chatacterized Hit- tr|C5XAM6|C5XAM6_SORBI
Putative uncharacterized protein Sb02g022810
OS=Sorghu,31.27,4e-18,seg,NULL,CUFF.60216.1
         (607 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64570.1 | Symbols: DUO3 | Homeodomain-like superfamily prote...   117   2e-26

>AT1G64570.1 | Symbols: DUO3 | Homeodomain-like superfamily protein |
            chr1:23978868-23983925 FORWARD LENGTH=1239
          Length = 1239

 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 176/560 (31%), Positives = 232/560 (41%), Gaps = 103/560 (18%)

Query: 14   YVHQAFLADWRPDTSAGTYSEHISSTSGEGNLARDAVSRENIQ--FYRAINDYGLSGKVQ 71
            Y+H+ FLADWRP       S  + S     ++  D    E++Q        +  L G   
Sbjct: 669  YLHEGFLADWRPGMPTFFSSAPMHSFDKAKDVPGD--RHESVQTCIVEGSKNPELCGAQI 726

Query: 72   HQNYQHAFP-FTPKFPQLFHTTSERSGTKGAPCADNPKNSVFTSSTNYYYRPYRSRKVNN 130
                Q   P F P +    HT+    G   AP                  RPYRSRKV N
Sbjct: 727  LTCTQRLAPSFIPMY---RHTSGTAPGASKAPI---------------IARPYRSRKVFN 768

Query: 131  AHLVKLAPDLPPVNLPPSVRVVSQTAFKGFQCGTSKMYPPGGSVTGCRIDNIASQIPHGE 190
              +V+LAPDLPPVNLP SVRV+SQ+ F   Q  TS           C I+   S +    
Sbjct: 769  RSVVRLAPDLPPVNLPSSVRVISQSVFAKNQSETSS--------KTCIINGGMSDVSGRG 820

Query: 191  KYGTVHPVEGAGPVLNGSVSGSLV--ERSGTAEGRSTVAEKSTCSELQMHPLLFQATNEG 248
             +G   P   A    NG  S  +V  +    AE  S + ++S  S+LQMHPLLF+    G
Sbjct: 821  NFGIETPCFSADRDNNGPPSEKVVDLQEDVPAESSSGMDKQSNDSDLQMHPLLFRTPEHG 880

Query: 249  NIPYYPLKXXXXXXXXXXXXXXXQPQLNLSLFHS-SQKQSSIDCASKSLRSKNSMLRSAG 307
             I  YP                 +PQL LSLF+S  Q   S D   ++  S         
Sbjct: 881  QITCYP-ANRDPGGSSFSFFSENRPQL-LSLFNSPKQINHSADQLHRNSSSNEYETAQGD 938

Query: 308  IDFHPLLQKFNDTQSQACS------------DDIQAESLVNSGVLATANRSSGLNDKSNE 355
            I FHPLLQ+     S   S            D +      +  V  TA   +G ND S E
Sbjct: 939  ICFHPLLQRTEYETSYVISRRGNLDPDIGKKDKLCQLQDTSGAVEKTAIPVTGRNDVSLE 998

Query: 356  ----------LDLDIHLSSVS---RNGKSVKSKQLEVQDPIGSKKTASTCGTAMKCQENS 402
                      ++LDI+LS+ S    NG SV                     +A    E  
Sbjct: 999  PFSSSTPGKNVNLDIYLSTSSSKVNNGGSV---------------------SAANISEAP 1037

Query: 403  VPCRQQGVENPTTSCCELTSSAPLVVPDDNITRYDVDDVGDQSHPGIVMXXXXXXXX--X 460
              C  Q          E+  SAP   P DNI+R  ++++ DQS+ GIVM           
Sbjct: 1038 DICMAQ-----LNDGSEVPGSAP---PSDNISRC-IEEMADQSNLGIVMEQEELSDSDDE 1088

Query: 461  XXXXXHVEFECEEMADSEGEDGSGSENTLKVQNKEVPRDNPGTQVDDSLLTNIATLDMGL 520
                 HVEFECEEMADSEGE+GS  E  +++Q+K    DN  + V+      I + D+  
Sbjct: 1089 MMEEEHVEFECEEMADSEGEEGSECEENIEMQDK----DNRNSVVE------ITSTDVDS 1138

Query: 521  TREVKDGKNKNSWLSLDSSS 540
             +E+      + WLSLD SS
Sbjct: 1139 GKELGKDSPNSPWLSLDPSS 1158