Miyakogusa Predicted Gene

Lj6g3v1839440.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1839440.1 tr|Q6K5M2|Q6K5M2_ORYSJ F-box family protein-like
OS=Oryza sativa subsp. japonica GN=P0677G01.25
PE=4,34.36,7e-18,coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY
NOT NAMED,NULL; seg,NULL,gene.g66766.t1.1
         (428 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G22030.1 | Symbols:  | F-box family protein with a domain of ...   303   2e-82
AT4G04480.1 | Symbols:  | unknown protein; LOCATED IN: chloropla...   296   2e-80

>AT4G22030.1 | Symbols:  | F-box family protein with a domain of
           unknown function (DUF295) | chr4:11672396-11675575
           FORWARD LENGTH=626
          Length = 626

 Score =  303 bits (775), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 159/339 (46%), Positives = 212/339 (62%), Gaps = 24/339 (7%)

Query: 83  LYAILEDVADRIEMHNNIGEQRDNWNTLLLNSINMIXXXXXXXXXXXXXXXXXXXXXXXX 142
           L A+LE+V DR+EMH NIGEQR+NWN+LLLNS+NMI                        
Sbjct: 88  LMAVLEEVIDRVEMHKNIGEQRNNWNSLLLNSVNMITLTAALMAGIASMNASGIDSVSAV 147

Query: 143 XXXXXXXXXXXX-XXXVMNKIQPSQLTEEQRNATRLFKQLKSHIETTI---AIGNPSEEY 198
                           +MNKIQPSQL EEQRNATRLFKQL++ IE  +   +    SEE 
Sbjct: 148 SIASTVLLASATGLAALMNKIQPSQLVEEQRNATRLFKQLRNRIEMVLREKSEDGISEED 207

Query: 199 IKGAMEKVLALDKAYPLPLLGKMLEKFPAKFEPAVWWPSSQFQKRENKKSQRVKEEGERM 258
           +K A+++VL LDKAYPLPL+G MLEKFP +F+PA WWP ++ +   ++            
Sbjct: 208 VKEAIKRVLCLDKAYPLPLVGTMLEKFPQEFKPATWWPETKPEPTHSRT----------- 256

Query: 259 GKMNGWNXXXXXXXXXXXXXXXXXDIEDYDRLGNIALKIHKNLAIAGPLLTGIAAAGSAF 318
            + NGWN                 D E+Y++LGN+ALK+++ LAI+GP+LTGIAA  S F
Sbjct: 257 -EANGWNSELEMEMREVVEVIKSRDAEEYEKLGNVALKLNRVLAISGPVLTGIAAVSSGF 315

Query: 319 VGNGS-WAALVPLMAGSLAAAINTFEHGGQVGMVFEMYRTSAGFFNMVETSIESTLEEKD 377
           +G+GS  A +V     SLAA +NT EHGGQVGMV EMYR SAGFF+++E +I++      
Sbjct: 316 IGHGSGLAGVVATTCASLAAVVNTLEHGGQVGMVVEMYRNSAGFFSLMEDTIKT------ 369

Query: 378 LERRENGELFEMNMALQLGRSVSQLRELASKSASYRMEG 416
            ERRENG++FE  +AL+LGRS+S+LR+LA +S+  R +G
Sbjct: 370 -ERRENGQVFETKVALKLGRSLSELRDLARRSSLSRFDG 407


>AT4G04480.1 | Symbols:  | unknown protein; LOCATED IN: chloroplast;
           EXPRESSED IN: flower, pollen tube; EXPRESSED DURING:
           petal differentiation and expansion stage; BEST
           Arabidopsis thaliana protein match is: F-box family
           protein with a domain of unknown function (DUF295)
           (TAIR:AT4G22030.1); Has 78 Blast hits to 78 proteins in
           10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr4:2229649-2230845 FORWARD
           LENGTH=398
          Length = 398

 Score =  296 bits (758), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 171/403 (42%), Positives = 233/403 (57%), Gaps = 29/403 (7%)

Query: 29  ATIHVPKHTRVGFSVPKIHARKLVEELKQKSDTTPLLXXXXXXXXXXXXXXXXXLYAILE 88
           A + +PK  +   SVPKI    + E   +  ++ PL                  L A+LE
Sbjct: 22  AAVSIPKLPKFHVSVPKIPTLSVKEPSFEFVESLPL---SLKQKRGSDSIQRTRLNAVLE 78

Query: 89  DVADRIEMHNNIGEQRDNWNTLLLNSINMIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 148
           +V DRIEMH NIG+QR+NWN+LLLNS+NMI                              
Sbjct: 79  EVMDRIEMHKNIGDQRNNWNSLLLNSVNMITLTAALMAGIASVNGHGVDSVTAVKIASTV 138

Query: 149 XXXXXX-XXXVMNKIQPSQLTEEQRNATRLFKQLKSHIETTIAIGNPSEEY-IKGAMEKV 206
                     +M+KIQPSQL EEQRNATRLFK+L+  IE  +      EE  +K  +++V
Sbjct: 139 LLTSATGFAALMSKIQPSQLAEEQRNATRLFKKLRVEIEMFLRENEEIEEEDVKEVIKRV 198

Query: 207 LALDKAYPLPLLGKMLEKFPAKFEPAVWWPSSQFQKRENKKSQRVKEEGERMGKMNGWNX 266
           L+LDKAYPLPL+G MLEKFP +F+PA WWP       ENK      E+  +    NGW+ 
Sbjct: 199 LSLDKAYPLPLIGTMLEKFPEEFKPATWWP-------ENK------EKNPKTSLANGWSQ 245

Query: 267 XXXXXXXXXXXXXXXXDIEDYDRLGNIALKIHKNLAIAGPLLTGIAAAGSAFVGNGS-WA 325
                           D E+Y++LG++ALK+++ LAI+GP+LTG++A  S F+G  S  A
Sbjct: 246 ELEAEMREVAHVVKSRDAEEYEKLGHVALKLNRFLAISGPVLTGVSAVSSVFIGQDSGLA 305

Query: 326 ALVPLMAGSLAAAINTFEHGGQVGMVFEMYRTSAGFFNMVETSIESTLEEKDLERRENGE 385
            +V +   SLAA +NT EHGGQVGMVFEMYR SAGFF+++E +++ST      E+RENG+
Sbjct: 306 GIVAMTCASLAAVVNTLEHGGQVGMVFEMYRNSAGFFSLLEETMKST------EKRENGQ 359

Query: 386 LFEMNMALQLGRSVSQLRELASKSASYRMEGVVDIDEFASKLF 428
           +FE  +A++LGRS+S+LR+LA +S   +    V   EFASKLF
Sbjct: 360 VFETRVAVKLGRSLSELRDLAKRSNLSQ----VKAKEFASKLF 398