Miyakogusa Predicted Gene

Lj6g3v1837420.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1837420.1 Non Chatacterized Hit- tr|B9S6I3|B9S6I3_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,35.58,2e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NULL,CUFF.59988.1
         (398 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G22030.1 | Symbols:  | F-box family protein with a domain of ...   369   e-102
AT4G04480.1 | Symbols:  | unknown protein; LOCATED IN: chloropla...   353   1e-97

>AT4G22030.1 | Symbols:  | F-box family protein with a domain of
           unknown function (DUF295) | chr4:11672396-11675575
           FORWARD LENGTH=626
          Length = 626

 Score =  369 bits (948), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/418 (47%), Positives = 273/418 (65%), Gaps = 43/418 (10%)

Query: 1   MVSLQTSA-LVSTSCSSIRTVNAAIHVPKLPRVSFRVPQLP-KTK-------------LV 45
           M SLQ S  +++TSCSS     +AI +PKLP+ +  +PQ+P K +               
Sbjct: 1   MASLQASRFMLTTSCSSCTRTRSAISIPKLPKFNVSIPQIPIKNRNFRVEEPILRLDGFA 60

Query: 46  EEFNRSKEQNNVLTEQTFDDLLHXXXXXXXXXXXXELYAILEAVADRIEMHKNIGEQRDN 105
           E+ + S  +     ++  DD +              L A+LE V DR+EMHKNIGEQR+N
Sbjct: 61  EDLDLSLSERQRQKKRGCDDQV---------LQRSRLMAVLEEVIDRVEMHKNIGEQRNN 111

Query: 106 WNTLLLNSINMMTLTATTMAGVAATIGDGA-PLLALKISSALLFSAAAGMLLIMNKIQPS 164
           WN+LLLNS+NM+TLTA  MAG+A+    G   + A+ I+S +L ++A G+  +MNKIQPS
Sbjct: 112 WNSLLLNSVNMITLTAALMAGIASMNASGIDSVSAVSIASTVLLASATGLAALMNKIQPS 171

Query: 165 QLTEEQRNATRLFKQLKSHIETTI---ALGNPTEEDVKGAMEKVLALDKAYPLPLLGAML 221
           QL EEQRNATRLFKQL++ IE  +   +    +EEDVK A+++VL LDKAYPLPL+G ML
Sbjct: 172 QLVEEQRNATRLFKQLRNRIEMVLREKSEDGISEEDVKEAIKRVLCLDKAYPLPLVGTML 231

Query: 222 EKFPAKFEPAVWWPSTQFKKENNVTVQSRRMGKVNGWSXXXXXXXXXXXXXXXXKDSEDY 281
           EKFP +F+PA WWP T+ +  ++ T       + NGW+                +D+E+Y
Sbjct: 232 EKFPQEFKPATWWPETKPEPTHSRT-------EANGWNSELEMEMREVVEVIKSRDAEEY 284

Query: 282 DRLGNIALKINKTLAIAGPLLTGVAAVGSTFVGNGS-WAAFVPLVAGSLAAAINTFEHGG 340
           ++LGN+ALK+N+ LAI+GP+LTG+AAV S F+G+GS  A  V     SLAA +NT EHGG
Sbjct: 285 EKLGNVALKLNRVLAISGPVLTGIAAVSSGFIGHGSGLAGVVATTCASLAAVVNTLEHGG 344

Query: 341 QVGMVFEMYRTSAGFFNMLETSIESTLGEKDLERRENGELFEMKMALQLGRSVSQLRE 398
           QVGMV EMYR SAGFF+++E +I++       ERRENG++FE K+AL+LGRS+S+LR+
Sbjct: 345 QVGMVVEMYRNSAGFFSLMEDTIKT-------ERRENGQVFETKVALKLGRSLSELRD 395


>AT4G04480.1 | Symbols:  | unknown protein; LOCATED IN: chloroplast;
           EXPRESSED IN: flower, pollen tube; EXPRESSED DURING:
           petal differentiation and expansion stage; BEST
           Arabidopsis thaliana protein match is: F-box family
           protein with a domain of unknown function (DUF295)
           (TAIR:AT4G22030.1); Has 78 Blast hits to 78 proteins in
           10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr4:2229649-2230845 FORWARD
           LENGTH=398
          Length = 398

 Score =  353 bits (905), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 197/404 (48%), Positives = 265/404 (65%), Gaps = 32/404 (7%)

Query: 1   MVSLQTSALVSTSCSSIRTVNAAIHVPKLPRVSFRVPQLPKTKLVE---EFNRSKEQNNV 57
           M SLQ S LV +S SS     AA+ +PKLP+    VP++P   + E   EF  S   +  
Sbjct: 1   MASLQVSRLVLSSSSSSTRPKAAVSIPKLPKFHVSVPKIPTLSVKEPSFEFVESLPLS-- 58

Query: 58  LTEQTFDDLLHXXXXXXXXXXXXELYAILEAVADRIEMHKNIGEQRDNWNTLLLNSINMM 117
           L ++   D +              L A+LE V DRIEMHKNIG+QR+NWN+LLLNS+NM+
Sbjct: 59  LKQKRGSDSIQRT----------RLNAVLEEVMDRIEMHKNIGDQRNNWNSLLLNSVNMI 108

Query: 118 TLTATTMAGVAATIGDGA-PLLALKISSALLFSAAAGMLLIMNKIQPSQLTEEQRNATRL 176
           TLTA  MAG+A+  G G   + A+KI+S +L ++A G   +M+KIQPSQL EEQRNATRL
Sbjct: 109 TLTAALMAGIASVNGHGVDSVTAVKIASTVLLTSATGFAALMSKIQPSQLAEEQRNATRL 168

Query: 177 FKQLKSHIETTI-ALGNPTEEDVKGAMEKVLALDKAYPLPLLGAMLEKFPAKFEPAVWWP 235
           FK+L+  IE  +       EEDVK  +++VL+LDKAYPLPL+G MLEKFP +F+PA WWP
Sbjct: 169 FKKLRVEIEMFLRENEEIEEEDVKEVIKRVLSLDKAYPLPLIGTMLEKFPEEFKPATWWP 228

Query: 236 STQFKKENNVTVQSRRMGKVNGWSXXXXXXXXXXXXXXXXKDSEDYDRLGNIALKINKTL 295
                KE N      +    NGWS                +D+E+Y++LG++ALK+N+ L
Sbjct: 229 EN---KEKN-----PKTSLANGWSQELEAEMREVAHVVKSRDAEEYEKLGHVALKLNRFL 280

Query: 296 AIAGPLLTGVAAVGSTFVGNGS-WAAFVPLVAGSLAAAINTFEHGGQVGMVFEMYRTSAG 354
           AI+GP+LTGV+AV S F+G  S  A  V +   SLAA +NT EHGGQVGMVFEMYR SAG
Sbjct: 281 AISGPVLTGVSAVSSVFIGQDSGLAGIVAMTCASLAAVVNTLEHGGQVGMVFEMYRNSAG 340

Query: 355 FFNMLETSIESTLGEKDLERRENGELFEMKMALQLGRSVSQLRE 398
           FF++LE +++ST      E+RENG++FE ++A++LGRS+S+LR+
Sbjct: 341 FFSLLEETMKST------EKRENGQVFETRVAVKLGRSLSELRD 378