Miyakogusa Predicted Gene

Lj6g3v1812090.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1812090.1 Non Chatacterized Hit- tr|I1QIS5|I1QIS5_ORYGL
Uncharacterized protein (Fragment) OS=Oryza
glaberrima,61.97,1e-18,RcbX,Chaperonin-like RbcX,CUFF.60078.1
         (133 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G04330.1 | Symbols:  | Chaperonin-like RbcX protein | chr4:21...   130   3e-31

>AT4G04330.1 | Symbols:  | Chaperonin-like RbcX protein |
           chr4:2116700-2118563 REVERSE LENGTH=174
          Length = 174

 Score =  130 bits (327), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 62/98 (63%), Positives = 74/98 (75%), Gaps = 2/98 (2%)

Query: 26  NYPFWPGNKRRSSPSTRIQCNKMFVPGFGEASPEAKAANNLHNFFTYTAVKIVAAQLESY 85
           +YP    +  R    TRI  NKM+VPGFGEASPEAKAA +LH+FFTY AV+IV+AQLESY
Sbjct: 27  SYPLMQSS--RKCKQTRICSNKMYVPGFGEASPEAKAAKHLHDFFTYVAVRIVSAQLESY 84

Query: 86  NPEAYEELMDFVGRHPLDDGDKFCATMFRESSRHKNLG 123
           NPEAY EL +F+  + + DGDKFCAT+ R SSRH NL 
Sbjct: 85  NPEAYMELREFLDTNSVSDGDKFCATLMRRSSRHMNLA 122