Miyakogusa Predicted Gene

Lj6g3v1786770.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1786770.1 Non Chatacterized Hit- tr|D7MV13|D7MV13_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,42.75,3e-18,coiled-coil,NULL; seg,NULL,CUFF.59928.1
         (208 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G22320.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   125   1e-29
AT4G22320.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   125   2e-29
AT5G55210.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    68   4e-12

>AT4G22320.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; EXPRESSED IN: 24 plant
           structures; EXPRESSED DURING: 14 growth stages; BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT5G55210.1). | chr4:11793129-11794596 REVERSE
           LENGTH=237
          Length = 237

 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 105/221 (47%), Gaps = 32/221 (14%)

Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVSPXXXXXXXXXXXXXXXXX------ 54
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVSP                       
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVSPSSKKDNNNSSSGSAAAAASVVNG 60

Query: 55  -XXXXXXXXXXLLLYKWTPITQSQXXXXXXXTKXXXXXXXXXXX------RRKFKYIPVA 107
                      LLLYKW P++Q+        ++                 RR+FKY+P+A
Sbjct: 61  GSNSDGSNGSHLLLYKWAPLSQNGNGNEDGKSESNSPSEDTVATVAEDPPRRRFKYVPIA 120

Query: 108 VLXXXXXX-----------XXXXXXXXXXXXXSKPIDVDSSAAEPT--QKNETLDEKPDI 154
           VL                                 +D D +  E +  +    ++EKPDI
Sbjct: 121 VLEEQKKEITEIEEDDKIEEDDKIDEDNKVEQEDKVDEDKTVEESSEKKAEVEVEEKPDI 180

Query: 155 NDVPMEESESQ------DKNQVVRQDLNESTLDLSLGLTSH 189
           NDVPME+ + +      D+ +VVRQDLNEST+DL L L ++
Sbjct: 181 NDVPMEDIQVEEKIVQDDEEKVVRQDLNESTVDLGLNLNAN 221


>AT4G22320.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G55210.1); Has 8953 Blast hits to 5363 proteins
           in 542 species: Archae - 33; Bacteria - 806; Metazoa -
           2454; Fungi - 831; Plants - 279; Viruses - 151; Other
           Eukaryotes - 4399 (source: NCBI BLink). |
           chr4:11793129-11794596 REVERSE LENGTH=238
          Length = 238

 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 104/222 (46%), Gaps = 33/222 (14%)

Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVSPXXXXXXXXXXXXXXXXX------ 54
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVSP                       
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVSPSSKKDNNNSSSGSAAAAASVVNG 60

Query: 55  -XXXXXXXXXXLLLYKWTPITQSQXXXXXXXTKXXXXXXXXXXX------RRKFKYIPVA 107
                      LLLYKW P++Q+        ++                 RR+FKY+P+A
Sbjct: 61  GSNSDGSNGSHLLLYKWAPLSQNGNGNEDGKSESNSPSEDTVATVAEDPPRRRFKYVPIA 120

Query: 108 VLXXXXXX-----------XXXXXXXXXXXXXSKPIDVDSSAAEPT--QKNETLDEKPDI 154
           VL                                 +D D +  E +  +    ++EKPDI
Sbjct: 121 VLEEQKKEITEIEEDDKIEEDDKIDEDNKVEQEDKVDEDKTVEESSEKKAEVEVEEKPDI 180

Query: 155 NDVPMEESE-------SQDKNQVVRQDLNESTLDLSLGLTSH 189
           NDVPME+ +         D+ +VVRQDLNEST+DL L L ++
Sbjct: 181 NDVPMEDIQQVEEKIVQDDEEKVVRQDLNESTVDLGLNLNAN 222


>AT5G55210.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
           growth stages; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT4G22320.1); Has 1807 Blast
           hits to 1807 proteins in 277 species: Archae - 0;
           Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
           Viruses - 0; Other Eukaryotes - 339 (source: NCBI
           BLink). | chr5:22396707-22397374 REVERSE LENGTH=168
          Length = 168

 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 55/112 (49%), Gaps = 9/112 (8%)

Query: 1   MEGVGARLGRSSTRY-GPAT--VFTGPVRKWKKKWVHVSPXXXXXXXXXXXXXXXXXXXX 57
           MEGVG+RL R+S+RY GPA   VF+G VRKWKKKWV VS                     
Sbjct: 1   MEGVGSRLSRTSSRYSGPAATAVFSGRVRKWKKKWVRVS--TSSVGVFRASKSNGRNNSN 58

Query: 58  XXXXXXXLLLYKWTPITQSQXXXXXXXTKXXXXXXXXXXXRRKFKYIPVAVL 109
                  LLL+KWTP+T +        +            +R+F+Y P+A+L
Sbjct: 59  NSNSPHHLLLHKWTPLTSA----TVTASDANGSGETEESPKRRFRYAPIAML 106