Miyakogusa Predicted Gene

Lj6g3v1766610.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1766610.1 Non Chatacterized Hit- tr|C6JRY0|C6JRY0_SORBI
Putative uncharacterized protein Sb0013s009080
OS=Sorg,56.69,1e-18,seg,NULL; TFIIF_alpha,Transcription initiation
factor IIF, alpha subunit; TFIIF-ALPHA,NULL,CUFF.59956.1
         (301 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G12610.2 | Symbols: RAP74, ATRAP74 | transcription activators...   135   4e-32
AT4G12610.1 | Symbols: RAP74, ATRAP74 | transcription activators...   134   6e-32

>AT4G12610.2 | Symbols: RAP74, ATRAP74 | transcription
           activators;DNA binding;RNA polymerase II transcription
           factors;catalytics;transcription initiation factors |
           chr4:7455565-7458318 FORWARD LENGTH=506
          Length = 506

 Score =  135 bits (340), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 84/160 (52%), Positives = 94/160 (58%), Gaps = 11/160 (6%)

Query: 147 KEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKVANNGPAAFGEH 206
           KEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNR+KTADGY+RWMMK ANNGPA FGE 
Sbjct: 4   KEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYQRWMMKAANNGPALFGEV 63

Query: 207 GRFDDKE-----SITGGGRSRKKTGEDDEGNVSXXXXXXXXXXXXXXXXXNRFGQNKKXX 261
              ++KE        G GR +   G+++EGNVS                 +R G N+K  
Sbjct: 64  D--NEKESGGTSGGGGRGRKKSSGGDEEEGNVS---DRGDEDEEEEASRKSRLGLNRK-S 117

Query: 262 XXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEAV 301
                                     WEHEEIFTDDDEAV
Sbjct: 118 NDDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAV 157


>AT4G12610.1 | Symbols: RAP74, ATRAP74 | transcription
           activators;DNA binding;RNA polymerase II transcription
           factors;catalytics;transcription initiation factors |
           chr4:7455565-7457465 FORWARD LENGTH=400
          Length = 400

 Score =  134 bits (338), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 82/158 (51%), Positives = 90/158 (56%), Gaps = 7/158 (4%)

Query: 147 KEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKVANNGPAAFGE- 205
           KEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNR+KTADGY+RWMMK ANNGPA FGE 
Sbjct: 4   KEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYQRWMMKAANNGPALFGEV 63

Query: 206 --HGRFDDKESITGGGRSRKKTGEDDEGNVSXXXXXXXXXXXXXXXXXNRFGQNKKXXXX 263
                        G GR +   G+++EGNVS                 +R G N+K    
Sbjct: 64  DNEKESGGTSGGGGRGRKKSSGGDEEEGNVS---DRGDEDEEEEASRKSRLGLNRK-SND 119

Query: 264 XXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEAV 301
                                   WEHEEIFTDDDEAV
Sbjct: 120 DDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAV 157