Miyakogusa Predicted Gene

Lj6g3v1753390.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1753390.1 tr|C3RVN2|C3RVN2_9CYAN Hypo1 OS=Lyngbya wollei
PE=4 SV=1,33.68,8e-19,DUF2854,Protein of unknown function DUF2854;
seg,NULL,CUFF.59906.1
         (284 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G38660.1 | Symbols: APE1 | acclimation of photosynthesis to  ...   320   8e-88
AT5G38660.2 | Symbols: APE1 | acclimation of photosynthesis to  ...   298   3e-81

>AT5G38660.1 | Symbols: APE1 | acclimation of photosynthesis to
           environment | chr5:15473285-15475497 REVERSE LENGTH=286
          Length = 286

 Score =  320 bits (819), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 157/227 (69%), Positives = 189/227 (83%), Gaps = 2/227 (0%)

Query: 59  KLSLTPRAADSSTTQPLGASTNNTTLVPDDDFSISKVSFXXXXXXXXXXXXSYGFGAYFN 118
           KL +  RAADS+++ P   ++ + TL+PDD+F+++K+SF            SYGFGAYF 
Sbjct: 59  KLDVVGRAADSTSSSPS-VASGDRTLIPDDEFTLAKISFGVIGLGLGVSLLSYGFGAYFT 117

Query: 119 ILPGSEWSALMLTYGFPLAIIGMALKYAELKPVPCLTYSDAQRLQDKCATPILKQVKSDV 178
           ILPG+EWSA+MLTYGFPL+IIGMALKYAELKPVPCL+YSDA +L++ CATPIL QV++DV
Sbjct: 118 ILPGTEWSAIMLTYGFPLSIIGMALKYAELKPVPCLSYSDAVKLRESCATPILTQVRNDV 177

Query: 179 TRYRYGDEQHLDEALKRIFQYGQGGGIPRRSAPVLQMIREEVTQDGKYVLVLVFEAKALQ 238
           TRYRYGDEQHL+EALKRIFQYG GGGIPRRSAP+LQ+IREEV  DG+Y +VLVFEAKAL 
Sbjct: 178 TRYRYGDEQHLEEALKRIFQYGLGGGIPRRSAPILQLIREEVLTDGRYCVVLVFEAKALT 237

Query: 239 LSDFEKRQAKFTSFFGPGVTAEVGKSE-KDLYEVRLISNTDPSASPS 284
           LSDFEKRQAKFTSFFGP +TAEVGK E ++LYEVRLISN   ++  S
Sbjct: 238 LSDFEKRQAKFTSFFGPNITAEVGKGESENLYEVRLISNLSTNSVSS 284


>AT5G38660.2 | Symbols: APE1 | acclimation of photosynthesis to
           environment | chr5:15471208-15475497 REVERSE LENGTH=431
          Length = 431

 Score =  298 bits (763), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 143/203 (70%), Positives = 171/203 (84%), Gaps = 1/203 (0%)

Query: 59  KLSLTPRAADSSTTQPLGASTNNTTLVPDDDFSISKVSFXXXXXXXXXXXXSYGFGAYFN 118
           KL +  RAADS+++     ++ + TL+PDD+F+++K+SF            SYGFGAYF 
Sbjct: 59  KLDVVGRAADSTSSS-PSVASGDRTLIPDDEFTLAKISFGVIGLGLGVSLLSYGFGAYFT 117

Query: 119 ILPGSEWSALMLTYGFPLAIIGMALKYAELKPVPCLTYSDAQRLQDKCATPILKQVKSDV 178
           ILPG+EWSA+MLTYGFPL+IIGMALKYAELKPVPCL+YSDA +L++ CATPIL QV++DV
Sbjct: 118 ILPGTEWSAIMLTYGFPLSIIGMALKYAELKPVPCLSYSDAVKLRESCATPILTQVRNDV 177

Query: 179 TRYRYGDEQHLDEALKRIFQYGQGGGIPRRSAPVLQMIREEVTQDGKYVLVLVFEAKALQ 238
           TRYRYGDEQHL+EALKRIFQYG GGGIPRRSAP+LQ+IREEV  DG+Y +VLVFEAKAL 
Sbjct: 178 TRYRYGDEQHLEEALKRIFQYGLGGGIPRRSAPILQLIREEVLTDGRYCVVLVFEAKALT 237

Query: 239 LSDFEKRQAKFTSFFGPGVTAEV 261
           LSDFEKRQAKFTSFFGP +TAEV
Sbjct: 238 LSDFEKRQAKFTSFFGPNITAEV 260