Miyakogusa Predicted Gene

Lj6g3v1753380.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1753380.1 Non Chatacterized Hit- tr|I3T7V1|I3T7V1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,46,2e-16,RVT_3,NULL; Ribonuclease H-like,Ribonuclease H-like
domain; RNASE_H,Ribonuclease H domain; no descri,CUFF.59904.1
         (124 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42905.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    67   2e-12

>AT5G42905.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr5:17201414-17202323
           REVERSE LENGTH=258
          Length = 258

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 50/97 (51%)

Query: 2   LVSWPAPSLNQVALNVDGSSYGNPGRAGFGGLMRDHDGKWLIGFSGHVDFADSLEVELLA 61
           L+ W  P +  V +N DG+S GNPG A  GG++RD +G W  GFS ++    +   EL  
Sbjct: 137 LIGWVLPCVGWVKVNTDGASRGNPGLASAGGVLRDCEGAWCGGFSLNIGRCSAQHAELWG 196

Query: 62  ILHGLRIAWDIGATDVSCRSDCTKALSLIQNPISHTH 98
           + +GL  AW+     V    D    +  ++  IS +H
Sbjct: 197 VYYGLYFAWEKKVPRVELEVDSEAIVGFLKTGISDSH 233