Miyakogusa Predicted Gene

Lj6g3v1752980.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1752980.1 tr|F1KUK0|F1KUK0_ASCSU Thymidine kinase
OS=Ascaris suum PE=2 SV=1,40.98,8e-16,seg,NULL;
TK_CELLULAR_TYPE,Thymidine kinase, conserved site; THYMIDINE
KINASE,Thymidine kinase; TK,T,CUFF.59870.1
         (279 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23070.1 | Symbols:  | Thymidine kinase | chr5:7741979-774282...   304   3e-83
AT3G07800.1 | Symbols:  | Thymidine kinase | chr3:2489944-249093...   296   1e-80

>AT5G23070.1 | Symbols:  | Thymidine kinase | chr5:7741979-7742827
           FORWARD LENGTH=282
          Length = 282

 Score =  304 bits (779), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 156/274 (56%), Positives = 199/274 (72%), Gaps = 10/274 (3%)

Query: 1   MKSILNPKLSAALSPNLPKFSSFALFPRPSEFMTPF-PTRIPNHLRLNPTHFSSRNM-IP 58
           M+++++P L A  S +L K S F+   R S  +    PT  P      P+  S+R +   
Sbjct: 6   MRTLISPSL-APFSLHLHKPSLFSTALRFSFSINNITPTNSP------PSTISTRKLQTK 58

Query: 59  TTQNRSLQXXXXXXXXXXGEIHVIVGPMFAGKTTSLIRRIQSESGNGRNVAIIKSSKDTR 118
            T+  S            GEIHV+VGPMF+GKTT+L+RRI +E   G+ +AIIKS+KDTR
Sbjct: 59  ATRVTSSSSSQPLSSSSPGEIHVVVGPMFSGKTTTLLRRILAERETGKRIAIIKSNKDTR 118

Query: 119 YGLDSIVTHDGTKLPCWALANLSSFKQKFGVDAYE-QLDVIGIDEAQFFDDLYDFCREAA 177
           Y  +SIVTHDG K PCW+L +LSSFK++FG D YE +LDVIGIDEAQFF DLY+FCREAA
Sbjct: 119 YCTESIVTHDGEKYPCWSLPDLSSFKERFGFDDYENRLDVIGIDEAQFFGDLYEFCREAA 178

Query: 178 DHDGKTVVVAGLDGNYLRRNFGSVLDIIPLADSVTKLTARCEICGKHAFFTLRKTQETQV 237
           D +GKTV+VAGLDG+++RR FGSVLD+IP+AD+VTKLT+RCE+CGK A FT+RKT+E + 
Sbjct: 179 DKEGKTVIVAGLDGDFMRRRFGSVLDLIPIADTVTKLTSRCEVCGKRALFTMRKTEEKET 238

Query: 238 ELIGGVDVYMPVCRQHYVNGQVAMETTRLVLESQ 271
           ELIGG +VYMPVCR HYV GQ  +ET R VL+S 
Sbjct: 239 ELIGGAEVYMPVCRSHYVCGQNVLETARAVLDSS 272


>AT3G07800.1 | Symbols:  | Thymidine kinase | chr3:2489944-2490935
           REVERSE LENGTH=238
          Length = 238

 Score =  296 bits (757), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 132/193 (68%), Positives = 164/193 (84%)

Query: 77  GEIHVIVGPMFAGKTTSLIRRIQSESGNGRNVAIIKSSKDTRYGLDSIVTHDGTKLPCWA 136
           G +HVI+GPMF+GK+TSL+RRI+SE  +GR+VA++KSSKDTRY  DS+VTHDG   PCWA
Sbjct: 31  GAVHVIMGPMFSGKSTSLLRRIKSEISDGRSVAMLKSSKDTRYAKDSVVTHDGIGFPCWA 90

Query: 137 LANLSSFKQKFGVDAYEQLDVIGIDEAQFFDDLYDFCREAADHDGKTVVVAGLDGNYLRR 196
           L +L SF +KFG+DAY +LDVIGIDEAQFF DLY+FC + AD DGK V+VAGLDG+YLRR
Sbjct: 91  LPDLMSFPEKFGLDAYNKLDVIGIDEAQFFGDLYEFCCKVADDDGKIVIVAGLDGDYLRR 150

Query: 197 NFGSVLDIIPLADSVTKLTARCEICGKHAFFTLRKTQETQVELIGGVDVYMPVCRQHYVN 256
           +FG+VLDIIP+ADSVTKLTARCE+CG  AFFTLRK  +T+ ELIGG DVYMPVCR+HY+ 
Sbjct: 151 SFGAVLDIIPIADSVTKLTARCEVCGHKAFFTLRKNCDTRTELIGGADVYMPVCRKHYIT 210

Query: 257 GQVAMETTRLVLE 269
             + ++ ++ VLE
Sbjct: 211 NHIVIKASKKVLE 223