Miyakogusa Predicted Gene

Lj6g3v1752830.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1752830.1 tr|B9IH40|B9IH40_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_575904 PE=4
SV=1,45.83,4e-17,coiled-coil,NULL; seg,NULL,CUFF.59855.1
         (130 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G16447.1 | Symbols:  | unknown protein; Has 30201 Blast hits ...    48   2e-06

>AT4G16447.1 | Symbols:  | unknown protein; Has 30201 Blast hits
          to 17322 proteins in 780 species: Archae - 12; Bacteria
          - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
          Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
          BLink). | chr4:9278829-9279206 FORWARD LENGTH=125
          Length = 125

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 28/37 (75%)

Query: 1  MGRKSQDPTVVSSSIALLQERFRQLQRVKEMREEREL 37
          + R  ++  V+ SSI LLQERFRQLQR +E+R EREL
Sbjct: 4  IARDRKEQMVIHSSIVLLQERFRQLQRARELRAEREL 40