Miyakogusa Predicted Gene

Lj6g3v1742800.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1742800.1 Non Chatacterized Hit- tr|F6I2A9|F6I2A9_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,65.08,0.00000000000001,SUBFAMILY NOT NAMED,NULL; STRESS ASSOCIATED
ENDOPLASMIC RETICULUM PROTEIN (SERP1/RAMP4),Endoplasmic ,CUFF.59852.1
         (63 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G27330.1 | Symbols:  | Ribosome associated membrane protein R...    52   5e-08
AT1G27350.1 | Symbols:  | Ribosome associated membrane protein R...    52   5e-08

>AT1G27330.1 | Symbols:  | Ribosome associated membrane protein
          RAMP4 | chr1:9493064-9493898 FORWARD LENGTH=68
          Length = 68

 Score = 52.4 bits (124), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 37/68 (54%), Gaps = 6/68 (8%)

Query: 1  MTTSRRVADRKVARFERNSLKKG------TKKGFPYPVGPIXXXXXXXXXXXXXXXQIIR 54
          MTTS+R+ADRK+ +F++N LK+G      TKKG  YPVGPI               QIIR
Sbjct: 1  MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 55 NAAGRATA 62
           A     A
Sbjct: 61 TATSGGMA 68


>AT1G27350.1 | Symbols:  | Ribosome associated membrane protein
          RAMP4 | chr1:9498319-9499303 REVERSE LENGTH=68
          Length = 68

 Score = 52.4 bits (124), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 37/68 (54%), Gaps = 6/68 (8%)

Query: 1  MTTSRRVADRKVARFERNSLKKG------TKKGFPYPVGPIXXXXXXXXXXXXXXXQIIR 54
          MTTS+R+ADRK+ +F++N LK+G      TKKG  YPVGPI               QIIR
Sbjct: 1  MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 55 NAAGRATA 62
           A     A
Sbjct: 61 TATSGGMA 68