Miyakogusa Predicted Gene

Lj6g3v1721640.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1721640.3 tr|B9NCM8|B9NCM8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_590992 PE=4
SV=1,63.64,7e-19,seg,NULL; HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING
PROTEIN,NULL; COPPER TRANSPORT PROTEIN ATOX1-RELA,CUFF.59847.3
         (235 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G16380.1 | Symbols:  | Heavy metal transport/detoxification s...    84   1e-16
AT4G16380.2 | Symbols:  | Heavy metal transport/detoxification s...    70   8e-13
AT1G49420.1 | Symbols:  | Heavy metal transport/detoxification s...    69   4e-12
AT1G51090.1 | Symbols:  | Heavy metal transport/detoxification s...    64   1e-10

>AT4G16380.1 | Symbols:  | Heavy metal transport/detoxification
          superfamily protein  | chr4:9254638-9255955 FORWARD
          LENGTH=254
          Length = 254

 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 48/68 (70%)

Query: 1  MKLKVDLEXXXXXXXXXXXXXXFPQIRDQKYDEKDNIVFITVVCCSPEKIRDKLCCKGGG 60
          MKLKVDL+              FPQIRDQ +DEK NIV I VVCCSPE+I DKLC KGGG
Sbjct: 12 MKLKVDLDCAKCYKKVKKVLCKFPQIRDQLFDEKSNIVIIKVVCCSPERIMDKLCSKGGG 71

Query: 61 TIKSIEIV 68
          +IK+IEIV
Sbjct: 72 SIKTIEIV 79


>AT4G16380.2 | Symbols:  | Heavy metal transport/detoxification
          superfamily protein  | chr4:9255148-9255955 FORWARD
          LENGTH=233
          Length = 233

 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 33/44 (75%), Positives = 38/44 (86%)

Query: 25 QIRDQKYDEKDNIVFITVVCCSPEKIRDKLCCKGGGTIKSIEIV 68
          +IRDQ +DEK NIV I VVCCSPE+I DKLC KGGG+IK+IEIV
Sbjct: 15 EIRDQLFDEKSNIVIIKVVCCSPERIMDKLCSKGGGSIKTIEIV 58


>AT1G49420.1 | Symbols:  | Heavy metal transport/detoxification
          superfamily protein  | chr1:18287859-18288650 REVERSE
          LENGTH=189
          Length = 189

 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 1  MKLKVD-LEXXXXXXXXXXXXXXFPQIRDQKYDEKDNIVFITVVCCSPEKIRDKLCCKGG 59
          MKLK + L                PQ+RDQK++E+ N V I VVCCSPEK+ DKLC KG 
Sbjct: 12 MKLKTEPLSNEKNFSKVKKALSSIPQVRDQKFEEETNTVTIKVVCCSPEKVMDKLCSKGR 71

Query: 60 GTIKSIEIV 68
          G IK IE +
Sbjct: 72 GAIKLIETI 80


>AT1G51090.1 | Symbols:  | Heavy metal transport/detoxification
          superfamily protein  | chr1:18932985-18933747 FORWARD
          LENGTH=171
          Length = 171

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 41/68 (60%)

Query: 1  MKLKVDLEXXXXXXXXXXXXXXFPQIRDQKYDEKDNIVFITVVCCSPEKIRDKLCCKGGG 60
          MKLKVDL               FPQI D+ +DEK N + I VVC  PE++ +KLC KG G
Sbjct: 8  MKLKVDLNCSKCYKKVKKAIRKFPQITDELFDEKSNTIIIKVVCYDPERLMNKLCYKGDG 67

Query: 61 TIKSIEIV 68
          +IKSI I+
Sbjct: 68 SIKSIVIL 75