Miyakogusa Predicted Gene
- Lj6g3v1709530.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1709530.2 Non Chatacterized Hit- tr|I1GZ02|I1GZ02_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,51.11,2e-18,Tudor/PWWP/MBT,NULL; seg,NULL,CUFF.59833.2
(451 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G47690.3 | Symbols: | binding | chr5:19317899-19327014 FORWA... 120 2e-27
AT5G47690.2 | Symbols: | binding | chr5:19317899-19327014 FORWA... 120 3e-27
AT5G47690.1 | Symbols: | binding | chr5:19317899-19327014 FORWA... 120 3e-27
AT5G10950.1 | Symbols: | Tudor/PWWP/MBT superfamily protein | c... 85 1e-16
AT1G15940.1 | Symbols: | Tudor/PWWP/MBT superfamily protein | c... 84 3e-16
AT1G80810.2 | Symbols: | Tudor/PWWP/MBT superfamily protein | c... 84 3e-16
AT1G80810.1 | Symbols: | Tudor/PWWP/MBT superfamily protein | c... 83 3e-16
AT4G31880.2 | Symbols: | LOCATED IN: cytosol; EXPRESSED IN: 24 ... 80 2e-15
AT4G31880.1 | Symbols: | LOCATED IN: cytosol, chloroplast; EXPR... 80 2e-15
AT4G32620.2 | Symbols: | Enhancer of polycomb-like transcriptio... 57 3e-08
AT4G32620.1 | Symbols: | Enhancer of polycomb-like transcriptio... 57 3e-08
AT4G02070.2 | Symbols: MSH6 | MUTS homolog 6 | chr4:906079-91293... 57 4e-08
AT4G02070.1 | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6 | c... 57 4e-08
AT1G77600.2 | Symbols: | ARM repeat superfamily protein | chr1:... 54 2e-07
AT1G77600.3 | Symbols: | ARM repeat superfamily protein | chr1:... 54 3e-07
AT1G77600.1 | Symbols: | ARM repeat superfamily protein | chr1:... 54 3e-07
AT1G05830.2 | Symbols: ATX2 | trithorax-like protein 2 | chr1:17... 52 1e-06
AT1G05830.1 | Symbols: ATX2, SDG30 | trithorax-like protein 2 | ... 52 1e-06
AT4G32970.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 51 1e-06
>AT5G47690.3 | Symbols: | binding | chr5:19317899-19327014 FORWARD
LENGTH=1607
Length = 1607
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 95/144 (65%), Gaps = 4/144 (2%)
Query: 120 SNFKSSIGSTKELKRKSIGGISKCTTMKGDSDAEDLIGCRIKVWWPLDKQFYEGTVKSYD 179
S KS+ GS K KRK++ G++KC+T + ++LIGCRI+VWWP+DK+FYEGTVKSYD
Sbjct: 1335 SKLKSASGSMK--KRKNVSGLAKCSTKENKLVNDELIGCRIEVWWPMDKRFYEGTVKSYD 1392
Query: 180 PSKRKHKISYDDGEVEELRLEKEHWELINKDPKPSKKLKPAKNPPFHEVYTRKKQRSPRG 239
+K++H I Y+DG+VE L L+KE WELI+ K +KK + +K + + K ++P G
Sbjct: 1393 STKQRHVILYEDGDVEVLNLKKEQWELIDTGGKTAKKSRTSKGNSKKKRSSGSKPKNPDG 1452
Query: 240 SASKK--TTKIANGKKSPSKHVKH 261
+ T GK++P K++K
Sbjct: 1453 VQRDEDPVTTTPKGKRTPKKNLKQ 1476
>AT5G47690.2 | Symbols: | binding | chr5:19317899-19327014 FORWARD
LENGTH=1606
Length = 1606
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 95/144 (65%), Gaps = 4/144 (2%)
Query: 120 SNFKSSIGSTKELKRKSIGGISKCTTMKGDSDAEDLIGCRIKVWWPLDKQFYEGTVKSYD 179
S KS+ GS K KRK++ G++KC+T + ++LIGCRI+VWWP+DK+FYEGTVKSYD
Sbjct: 1335 SKLKSASGSMK--KRKNVSGLAKCSTKENKLVNDELIGCRIEVWWPMDKRFYEGTVKSYD 1392
Query: 180 PSKRKHKISYDDGEVEELRLEKEHWELINKDPKPSKKLKPAKNPPFHEVYTRKKQRSPRG 239
+K++H I Y+DG+VE L L+KE WELI+ K +KK + +K + + K ++P G
Sbjct: 1393 STKQRHVILYEDGDVEVLNLKKEQWELIDTGGKTAKKSRTSKGNSKKKRSSGSKPKNPDG 1452
Query: 240 SASKK--TTKIANGKKSPSKHVKH 261
+ T GK++P K++K
Sbjct: 1453 VQRDEDPVTTTPKGKRTPKKNLKQ 1476
>AT5G47690.1 | Symbols: | binding | chr5:19317899-19327014 FORWARD
LENGTH=1605
Length = 1605
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 95/144 (65%), Gaps = 4/144 (2%)
Query: 120 SNFKSSIGSTKELKRKSIGGISKCTTMKGDSDAEDLIGCRIKVWWPLDKQFYEGTVKSYD 179
S KS+ GS K KRK++ G++KC+T + ++LIGCRI+VWWP+DK+FYEGTVKSYD
Sbjct: 1334 SKLKSASGSMK--KRKNVSGLAKCSTKENKLVNDELIGCRIEVWWPMDKRFYEGTVKSYD 1391
Query: 180 PSKRKHKISYDDGEVEELRLEKEHWELINKDPKPSKKLKPAKNPPFHEVYTRKKQRSPRG 239
+K++H I Y+DG+VE L L+KE WELI+ K +KK + +K + + K ++P G
Sbjct: 1392 STKQRHVILYEDGDVEVLNLKKEQWELIDTGGKTAKKSRTSKGNSKKKRSSGSKPKNPDG 1451
Query: 240 SASKK--TTKIANGKKSPSKHVKH 261
+ T GK++P K++K
Sbjct: 1452 VQRDEDPVTTTPKGKRTPKKNLKQ 1475
>AT5G10950.1 | Symbols: | Tudor/PWWP/MBT superfamily protein |
chr5:3459557-3461632 REVERSE LENGTH=395
Length = 395
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 45/58 (77%)
Query: 153 EDLIGCRIKVWWPLDKQFYEGTVKSYDPSKRKHKISYDDGEVEELRLEKEHWELINKD 210
E L+G RI+VWWP+D +FY+G V SY SK+KH++ Y+DG+ E L L+KE WELI +D
Sbjct: 35 EALVGSRIRVWWPMDSKFYKGVVDSYVSSKKKHRVFYEDGDKETLDLKKERWELIEED 92
>AT1G15940.1 | Symbols: | Tudor/PWWP/MBT superfamily protein |
chr1:5473672-5478050 FORWARD LENGTH=990
Length = 990
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 45/55 (81%)
Query: 153 EDLIGCRIKVWWPLDKQFYEGTVKSYDPSKRKHKISYDDGEVEELRLEKEHWELI 207
E+L+G R+ VWWPLDK+FYEG +KSY K+ H+++Y DG+VEEL L+KE +++I
Sbjct: 569 EELVGKRVNVWWPLDKKFYEGVIKSYCRVKKMHQVTYSDGDVEELNLKKERFKII 623
>AT1G80810.2 | Symbols: | Tudor/PWWP/MBT superfamily protein |
chr1:30365575-30368898 FORWARD LENGTH=774
Length = 774
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Query: 148 GDSDAEDLIGCRIKVWWPLDKQFYEGTVKSYDPSKRKHKISYDDGEVEELRLEKEHWELI 207
D EDL+G R+ +WWPLDK FYEG + SY K+ H++ Y DG+ EEL L +E WEL+
Sbjct: 498 SDGFGEDLVGKRVNIWWPLDKTFYEGVIDSYCTRKKMHRVIYSDGDSEELNLTEERWELL 557
Query: 208 NKDPKPSKKLKPAKNP---PFHEVYTRKKQRSPRGSA 241
D ++ K P P ++ R+K + + A
Sbjct: 558 EDDTSADEQDKEIDLPESIPLSDIMQRQKVKKSKNVA 594
>AT1G80810.1 | Symbols: | Tudor/PWWP/MBT superfamily protein |
chr1:30365575-30368898 FORWARD LENGTH=773
Length = 773
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 148 GDSDAEDLIGCRIKVWWPLDKQFYEGTVKSYDPSKRKHKISYDDGEVEELRLEKEHWELI 207
D EDL+G R+ +WWPLDK FYEG + SY K+ H++ Y DG+ EEL L +E WEL+
Sbjct: 498 SDGFGEDLVGKRVNIWWPLDKTFYEGVIDSYCTRKKMHRVIYSDGDSEELNLTEERWELL 557
Query: 208 NKDPKP--SKKLKPAKNPPFHEVYTRKKQRSPRGSA 241
D K++ ++ P ++ R+K + + A
Sbjct: 558 EDDTSADEDKEIDLPESIPLSDIMQRQKVKKSKNVA 593
>AT4G31880.2 | Symbols: | LOCATED IN: cytosol; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 14 growth stages;
BEST Arabidopsis thaliana protein match is:
Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1). |
chr4:15419435-15423939 REVERSE LENGTH=872
Length = 872
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 43/58 (74%)
Query: 147 KGDSDAEDLIGCRIKVWWPLDKQFYEGTVKSYDPSKRKHKISYDDGEVEELRLEKEHW 204
+G + E L+G RIKVWWP+D+ +Y+G V+SYD +K+KH + YDDG+ E L L+ + W
Sbjct: 599 QGKASGESLVGSRIKVWWPMDQAYYKGVVESYDAAKKKHLVIYDDGDQEILYLKNQKW 656
>AT4G31880.1 | Symbols: | LOCATED IN: cytosol, chloroplast;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14
growth stages; BEST Arabidopsis thaliana protein match
is: Tudor/PWWP/MBT superfamily protein
(TAIR:AT1G15940.1); Has 137162 Blast hits to 70781
proteins in 2973 species: Archae - 289; Bacteria -
24182; Metazoa - 56725; Fungi - 20130; Plants - 6559;
Viruses - 758; Other Eukaryotes - 28519 (source: NCBI
BLink). | chr4:15419435-15423939 REVERSE LENGTH=873
Length = 873
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 43/58 (74%)
Query: 147 KGDSDAEDLIGCRIKVWWPLDKQFYEGTVKSYDPSKRKHKISYDDGEVEELRLEKEHW 204
+G + E L+G RIKVWWP+D+ +Y+G V+SYD +K+KH + YDDG+ E L L+ + W
Sbjct: 600 QGKASGESLVGSRIKVWWPMDQAYYKGVVESYDAAKKKHLVIYDDGDQEILYLKNQKW 657
>AT4G32620.2 | Symbols: | Enhancer of polycomb-like transcription
factor protein | chr4:15731968-15737222 FORWARD
LENGTH=1540
Length = 1540
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 16/104 (15%)
Query: 145 TMKGDSDAEDLIGCRIKVWWPLDKQFYEGTVKSYDPSKRKHKISYDDGEVEELRLEKEHW 204
+ D D+ L+ +IKV+WPLD+++Y G V +D K H + YDD + E + L+ E +
Sbjct: 345 ILFSDVDSHWLLNKKIKVFWPLDERWYHGFVDGFDGDKNLHHVKYDDRDEEWINLQGERF 404
Query: 205 ELINKDPKPSKKLKPAKNPPFHEVYTRKKQRSPRGSASKKTTKI 248
+++ L P++ P K QR R S SK T K+
Sbjct: 405 KIL---------LFPSEVPG-------KNQRKRRCSESKSTQKV 432
>AT4G32620.1 | Symbols: | Enhancer of polycomb-like transcription
factor protein | chr4:15731968-15737222 FORWARD
LENGTH=1539
Length = 1539
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 16/104 (15%)
Query: 145 TMKGDSDAEDLIGCRIKVWWPLDKQFYEGTVKSYDPSKRKHKISYDDGEVEELRLEKEHW 204
+ D D+ L+ +IKV+WPLD+++Y G V +D K H + YDD + E + L+ E +
Sbjct: 345 ILFSDVDSHWLLNKKIKVFWPLDERWYHGFVDGFDGDKNLHHVKYDDRDEEWINLQGERF 404
Query: 205 ELINKDPKPSKKLKPAKNPPFHEVYTRKKQRSPRGSASKKTTKI 248
+++ L P++ P K QR R S SK T K+
Sbjct: 405 KIL---------LFPSEVPG-------KNQRKRRCSESKSTQKV 432
>AT4G02070.2 | Symbols: MSH6 | MUTS homolog 6 | chr4:906079-912930
FORWARD LENGTH=1321
Length = 1321
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 40/55 (72%)
Query: 153 EDLIGCRIKVWWPLDKQFYEGTVKSYDPSKRKHKISYDDGEVEELRLEKEHWELI 207
++++G +++V+WPLDK++Y+G+V YD + KH + Y+DGE E L L KE E +
Sbjct: 122 DEVVGKQVRVYWPLDKKWYDGSVTFYDKGEGKHVVEYEDGEEESLDLGKEKTEWV 176
>AT4G02070.1 | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6 |
chr4:906079-912930 FORWARD LENGTH=1324
Length = 1324
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 40/55 (72%)
Query: 153 EDLIGCRIKVWWPLDKQFYEGTVKSYDPSKRKHKISYDDGEVEELRLEKEHWELI 207
++++G +++V+WPLDK++Y+G+V YD + KH + Y+DGE E L L KE E +
Sbjct: 122 DEVVGKQVRVYWPLDKKWYDGSVTFYDKGEGKHVVEYEDGEEESLDLGKEKTEWV 176
>AT1G77600.2 | Symbols: | ARM repeat superfamily protein |
chr1:29152890-29162156 REVERSE LENGTH=1410
Length = 1410
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%)
Query: 153 EDLIGCRIKVWWPLDKQFYEGTVKSYDPSKRKHKISYDDGEVEELRLEKEHWE 205
E +IG RIK+ P D FY GTV+ ++ HKI +D+G+VE + L+ E WE
Sbjct: 1255 EAIIGQRIKLLSPTDGCFYPGTVEKFNSKSNSHKIIFDNGDVELVCLDSESWE 1307
>AT1G77600.3 | Symbols: | ARM repeat superfamily protein |
chr1:29152890-29162156 REVERSE LENGTH=1424
Length = 1424
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%)
Query: 153 EDLIGCRIKVWWPLDKQFYEGTVKSYDPSKRKHKISYDDGEVEELRLEKEHWE 205
E +IG RIK+ P D FY GTV+ ++ HKI +D+G+VE + L+ E WE
Sbjct: 1269 EAIIGQRIKLLSPTDGCFYPGTVEKFNSKSNSHKIIFDNGDVELVCLDSESWE 1321
>AT1G77600.1 | Symbols: | ARM repeat superfamily protein |
chr1:29152890-29162156 REVERSE LENGTH=1367
Length = 1367
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%)
Query: 153 EDLIGCRIKVWWPLDKQFYEGTVKSYDPSKRKHKISYDDGEVEELRLEKEHWE 205
E +IG RIK+ P D FY GTV+ ++ HKI +D+G+VE + L+ E WE
Sbjct: 1219 EAIIGQRIKLLSPTDGCFYPGTVEKFNSKSNSHKIIFDNGDVELVCLDSESWE 1271
>AT1G05830.2 | Symbols: ATX2 | trithorax-like protein 2 |
chr1:1754452-1761225 FORWARD LENGTH=1083
Length = 1083
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 151 DAEDLIGCRIKVWWPLDKQFYEGTVKSYDPSKRKHKISYDDGEVEELRLEKEHWE-LINK 209
D + IG + KV+WPLD +Y G++ Y+ + H + Y DG+ EEL L +E + LI++
Sbjct: 216 DPKHFIGLQCKVFWPLDAVWYPGSIVGYNVETKHHIVKYGDGDGEELALRREKIKFLISR 275
Query: 210 DPKPSKKLKPAKN 222
D +K N
Sbjct: 276 DDMELLNMKFGTN 288
>AT1G05830.1 | Symbols: ATX2, SDG30 | trithorax-like protein 2 |
chr1:1754452-1761225 FORWARD LENGTH=1083
Length = 1083
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 151 DAEDLIGCRIKVWWPLDKQFYEGTVKSYDPSKRKHKISYDDGEVEELRLEKEHWE-LINK 209
D + IG + KV+WPLD +Y G++ Y+ + H + Y DG+ EEL L +E + LI++
Sbjct: 216 DPKHFIGLQCKVFWPLDAVWYPGSIVGYNVETKHHIVKYGDGDGEELALRREKIKFLISR 275
Query: 210 DPKPSKKLKPAKN 222
D +K N
Sbjct: 276 DDMELLNMKFGTN 288
>AT4G32970.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G32960.1); Has 552 Blast hits to 489 proteins
in 85 species: Archae - 4; Bacteria - 14; Metazoa - 187;
Fungi - 12; Plants - 225; Viruses - 0; Other Eukaryotes
- 110 (source: NCBI BLink). | chr4:15910671-15914300
REVERSE LENGTH=638
Length = 638
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 153 EDLIGCRIKVWWPLDKQFYEGTVKSYDPSKRKHK 186
E ++G R+K+WWPLD+ +YE V SY +K +H+
Sbjct: 283 EKIVGSRVKIWWPLDRAYYEAVVISYCSAKERHR 316