Miyakogusa Predicted Gene

Lj6g3v1708410.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1708410.1 Non Chatacterized Hit- tr|I3SE30|I3SE30_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.05,0,polyprenyl_synt,Polyprenyl synthetase;
POLYPRENYL_SYNTHASE_2,Polyprenyl synthetase;
POLYPRENYL_SYNTH,CUFF.59830.1
         (220 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G47770.1 | Symbols: FPS1 | farnesyl diphosphate synthase 1 | ...   377   e-105
AT4G17190.1 | Symbols: FPS2 | farnesyl diphosphate synthase 2 | ...   374   e-104
AT4G17190.2 | Symbols: FPS2 | farnesyl diphosphate synthase 2 | ...   276   1e-74

>AT5G47770.1 | Symbols: FPS1 | farnesyl diphosphate synthase 1 |
           chr5:19345297-19347415 FORWARD LENGTH=384
          Length = 384

 Score =  377 bits (968), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 171/210 (81%), Positives = 194/210 (92%)

Query: 1   MLDYNVPGGKLNRGLSVIDSYRLLKEGQALNDDEIFLASALGWCIEWLQAYFLVLDDIMD 60
           MLDYNV GGKLNRGLSV+DS++LLK+G  L + E+FL+ ALGWCIEWLQAYFLVLDDIMD
Sbjct: 80  MLDYNVRGGKLNRGLSVVDSFKLLKQGNDLTEQEVFLSCALGWCIEWLQAYFLVLDDIMD 139

Query: 61  NSHTRRGQPCWYRIPKVGLIAANDGILLRNHIPRILKKHFRGKPYYADLLDLFNEVEFQT 120
           NS TRRGQPCW+R+P+VG++A NDGILLRNHI RILKKHFR KPYY DL+DLFNEVE QT
Sbjct: 140 NSVTRRGQPCWFRVPQVGMVAINDGILLRNHIHRILKKHFRDKPYYVDLVDLFNEVELQT 199

Query: 121 ASGQMIDLITTLEGEKDLSKYTLSLHRRIVQYKTAYYSFYLPVACALLMAGENLDNHIDV 180
           A GQMIDLITT EGEKDL+KY+LS+HRRIVQYKTAYYSFYLPVACALLMAGENL+NHIDV
Sbjct: 200 ACGQMIDLITTFEGEKDLAKYSLSIHRRIVQYKTAYYSFYLPVACALLMAGENLENHIDV 259

Query: 181 KDILVEMGTYFQVQDDYLDCFGDPQTIGKV 210
           K++LV+MG YFQVQDDYLDCF DP+T+GK+
Sbjct: 260 KNVLVDMGIYFQVQDDYLDCFADPETLGKI 289


>AT4G17190.1 | Symbols: FPS2 | farnesyl diphosphate synthase 2 |
           chr4:9648743-9650865 REVERSE LENGTH=342
          Length = 342

 Score =  374 bits (961), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 172/210 (81%), Positives = 190/210 (90%)

Query: 1   MLDYNVPGGKLNRGLSVIDSYRLLKEGQALNDDEIFLASALGWCIEWLQAYFLVLDDIMD 60
           MLDYNV GGKLNRGLSV+DSY+LLK+GQ L + E FL+ ALGWCIEWLQAYFLVLDDIMD
Sbjct: 38  MLDYNVRGGKLNRGLSVVDSYKLLKQGQDLTEKETFLSCALGWCIEWLQAYFLVLDDIMD 97

Query: 61  NSHTRRGQPCWYRIPKVGLIAANDGILLRNHIPRILKKHFRGKPYYADLLDLFNEVEFQT 120
           NS TRRGQPCW+R PKVG+IA NDGILLRNHI RILKKHFR  PYY DL+DLFNEVEFQT
Sbjct: 98  NSVTRRGQPCWFRKPKVGMIAINDGILLRNHIHRILKKHFREMPYYVDLVDLFNEVEFQT 157

Query: 121 ASGQMIDLITTLEGEKDLSKYTLSLHRRIVQYKTAYYSFYLPVACALLMAGENLDNHIDV 180
           A GQMIDLITT +GEKDLSKY+L +HRRIV+YKTAYYSFYLPVACALLMAGENL+NH DV
Sbjct: 158 ACGQMIDLITTFDGEKDLSKYSLQIHRRIVEYKTAYYSFYLPVACALLMAGENLENHTDV 217

Query: 181 KDILVEMGTYFQVQDDYLDCFGDPQTIGKV 210
           K +LV+MG YFQVQDDYLDCF DP+T+GK+
Sbjct: 218 KTVLVDMGIYFQVQDDYLDCFADPETLGKI 247


>AT4G17190.2 | Symbols: FPS2 | farnesyl diphosphate synthase 2 |
           chr4:9648743-9650346 REVERSE LENGTH=247
          Length = 247

 Score =  276 bits (705), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 125/152 (82%), Positives = 138/152 (90%)

Query: 59  MDNSHTRRGQPCWYRIPKVGLIAANDGILLRNHIPRILKKHFRGKPYYADLLDLFNEVEF 118
           MDNS TRRGQPCW+R PKVG+IA NDGILLRNHI RILKKHFR  PYY DL+DLFNEVEF
Sbjct: 1   MDNSVTRRGQPCWFRKPKVGMIAINDGILLRNHIHRILKKHFREMPYYVDLVDLFNEVEF 60

Query: 119 QTASGQMIDLITTLEGEKDLSKYTLSLHRRIVQYKTAYYSFYLPVACALLMAGENLDNHI 178
           QTA GQMIDLITT +GEKDLSKY+L +HRRIV+YKTAYYSFYLPVACALLMAGENL+NH 
Sbjct: 61  QTACGQMIDLITTFDGEKDLSKYSLQIHRRIVEYKTAYYSFYLPVACALLMAGENLENHT 120

Query: 179 DVKDILVEMGTYFQVQDDYLDCFGDPQTIGKV 210
           DVK +LV+MG YFQVQDDYLDCF DP+T+GK+
Sbjct: 121 DVKTVLVDMGIYFQVQDDYLDCFADPETLGKI 152