Miyakogusa Predicted Gene

Lj6g3v1705080.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1705080.1 CUFF.59979.1
         (723 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13300.1 | Symbols: VCS | Transducin/WD40 repeat-like superfa...   487   e-137
AT3G13300.2 | Symbols: VCS | Transducin/WD40 repeat-like superfa...   487   e-137
AT3G13290.1 | Symbols: VCR | varicose-related | chr3:4297529-430...   310   3e-84

>AT3G13300.1 | Symbols: VCS | Transducin/WD40 repeat-like superfamily
            protein | chr3:4304085-4309949 FORWARD LENGTH=1344
          Length = 1344

 Score =  487 bits (1253), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 306/766 (39%), Positives = 412/766 (53%), Gaps = 96/766 (12%)

Query: 1    MCQWMKSRLASASADGTVKIWEERKATPLAVLRPYDGKPVDSVTFLTAPHRPDHIILITV 60
            MCQWM +RL S+S DGT+KIW++RKA PL VLRP+DG PV S TF+T+P RPDHIILIT 
Sbjct: 364  MCQWMTTRLVSSSVDGTIKIWQDRKAQPLVVLRPHDGHPVSSATFVTSPERPDHIILITG 423

Query: 61   GPLNREVKIWVSDNEEGWLLPSDSESWNCIQTLDIKSSSEPNPEDAFFNQVVALPRAGLF 120
            GPLNRE+KIWVS  EEGWLLP+D+ESW C QTLD+KSS+EP  E+AFFNQV+AL  AGL 
Sbjct: 424  GPLNREMKIWVSAGEEGWLLPADAESWRCTQTLDLKSSTEPRAEEAFFNQVIALSEAGLL 483

Query: 121  LLANAKKNTIYAVHIEFGTNPTATRLDYIAEFTVTMPILSLTGTSDSLPDGDHIVQIYCV 180
            LLANAK+N +YAVH+++G++P  TR+DY++EFTVTMPILS  GT+D  P  + IV++YCV
Sbjct: 484  LLANAKRNALYAVHLDYGSSPVGTRMDYLSEFTVTMPILSFIGTND--PPEEPIVKVYCV 541

Query: 181  QTQAIQQYGLTLSQCLPPPLDNVELEKIES--SRDFDALDGST----------------- 221
            QT AIQQY L L  CLPPP++N+ LEK +S  SR+ + ++G +                 
Sbjct: 542  QTLAIQQYTLDLCLCLPPPIENMGLEKSDSSVSREANLVEGMSEPSGLKPTDLPSVDSVP 601

Query: 222  -------NQEAGNMPQAGNMDGSESAVIRPSESLASPDTSGLPE---------TSIPDTE 265
                     E+ N     + + +  A++ P+     P TSGLP           ++P   
Sbjct: 602  KPSIIVNRSESANKLSFPSAEATSQAIVPPN---GEPKTSGLPSQTSGAGSAYATLPQLP 658

Query: 266  TKPNDLSSHNGFDHIHTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHINEQQRNFD- 324
              P   S  +G+   HT                               D + E  RN D 
Sbjct: 659  LSPRLSSKLSGY---HTP--VEAIEPVIPHHELGGKTPSADYSVDRQMDAVGE--RNLDV 711

Query: 325  SSTEQIIESGKDNVAEMPASSDNLQNTXXXXXXXXXXXXXXPTVFKHPTHLVTPSEI--- 381
            SS E+I  S   NV       D++                    FKHPTHLVTPSEI   
Sbjct: 712  SSVEEISRSKDSNV----TPDDDVSGMRSPS-----------AFFKHPTHLVTPSEILMG 756

Query: 382  --ASKAALSSENSYASDCMNVQDVTSH-RDAXXXXXXXXXXXXTGSNQENNEHDRDRNLQ 438
              +++A++++E+    D  N+QDV +  RD             T  N E N+HD   N  
Sbjct: 757  VSSAEASITTEDRRDRDA-NIQDVNNDPRDTEVEVKEISEARST-QNGEINDHDETENC- 813

Query: 439  TNVNEKKEKLFYSQASDLGIQMARDTY-NNEVVHQPDNINTIGAPDQSCSSIGQEVKNTS 497
               +E +EK+F SQ S+L  +MARD Y + E    P      G P ++    G E    S
Sbjct: 814  --TSENREKVFCSQVSNLSTEMARDCYPSTEGTFIPGESKAYGQPIKA----GDESGVDS 867

Query: 498  KEAPANISESETVAATLLSPAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDQGGNP 557
            +  PA + + +   A   S  P                               N+Q  + 
Sbjct: 868  RGGPAKLLKGKKQKAK-NSQGPG---------------LSSTSSNVANLADSFNEQSQS- 910

Query: 558  RGSSMEVASPQLSSMQEMMGQLLSMHKEMQKQMNVMVSAPVTKEGKRLEVSLGRAMEKAV 617
                M    PQL +MQE M Q+++  KEMQ+Q++   + P+ KE KRLEV+LGR +EK+ 
Sbjct: 911  LSHPMTDLLPQLLAMQETMNQVMASQKEMQRQLSNAATGPIGKESKRLEVALGRMIEKSS 970

Query: 618  KSNTDALWARLQEESAKQEKLERENMQQITNMISNFINKDMPXXXXXXXXXXXXXXXXXX 677
            KSN DALWAR+QEE+ K EK  R++ QQI N  +NF++K++                   
Sbjct: 971  KSNADALWARIQEETVKNEKALRDHAQQIVNATTNFMSKELNAMFEKTIKKELAAIGPAL 1030

Query: 678  XXXXXXXXEKAISSAVMESFQKGVGDKVLNQLEKSVSSKLEATVAR 723
                    EK +SSA+ ESFQ+G+GDK +NQL+KSV+ KLEATVAR
Sbjct: 1031 ARSVVPVIEKTVSSAITESFQRGIGDKAVNQLDKSVNIKLEATVAR 1076


>AT3G13300.2 | Symbols: VCS | Transducin/WD40 repeat-like superfamily
            protein | chr3:4304085-4309949 FORWARD LENGTH=1309
          Length = 1309

 Score =  487 bits (1253), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 306/766 (39%), Positives = 412/766 (53%), Gaps = 96/766 (12%)

Query: 1    MCQWMKSRLASASADGTVKIWEERKATPLAVLRPYDGKPVDSVTFLTAPHRPDHIILITV 60
            MCQWM +RL S+S DGT+KIW++RKA PL VLRP+DG PV S TF+T+P RPDHIILIT 
Sbjct: 329  MCQWMTTRLVSSSVDGTIKIWQDRKAQPLVVLRPHDGHPVSSATFVTSPERPDHIILITG 388

Query: 61   GPLNREVKIWVSDNEEGWLLPSDSESWNCIQTLDIKSSSEPNPEDAFFNQVVALPRAGLF 120
            GPLNRE+KIWVS  EEGWLLP+D+ESW C QTLD+KSS+EP  E+AFFNQV+AL  AGL 
Sbjct: 389  GPLNREMKIWVSAGEEGWLLPADAESWRCTQTLDLKSSTEPRAEEAFFNQVIALSEAGLL 448

Query: 121  LLANAKKNTIYAVHIEFGTNPTATRLDYIAEFTVTMPILSLTGTSDSLPDGDHIVQIYCV 180
            LLANAK+N +YAVH+++G++P  TR+DY++EFTVTMPILS  GT+D  P  + IV++YCV
Sbjct: 449  LLANAKRNALYAVHLDYGSSPVGTRMDYLSEFTVTMPILSFIGTND--PPEEPIVKVYCV 506

Query: 181  QTQAIQQYGLTLSQCLPPPLDNVELEKIES--SRDFDALDGST----------------- 221
            QT AIQQY L L  CLPPP++N+ LEK +S  SR+ + ++G +                 
Sbjct: 507  QTLAIQQYTLDLCLCLPPPIENMGLEKSDSSVSREANLVEGMSEPSGLKPTDLPSVDSVP 566

Query: 222  -------NQEAGNMPQAGNMDGSESAVIRPSESLASPDTSGLPE---------TSIPDTE 265
                     E+ N     + + +  A++ P+     P TSGLP           ++P   
Sbjct: 567  KPSIIVNRSESANKLSFPSAEATSQAIVPPN---GEPKTSGLPSQTSGAGSAYATLPQLP 623

Query: 266  TKPNDLSSHNGFDHIHTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHINEQQRNFD- 324
              P   S  +G+   HT                               D + E  RN D 
Sbjct: 624  LSPRLSSKLSGY---HTP--VEAIEPVIPHHELGGKTPSADYSVDRQMDAVGE--RNLDV 676

Query: 325  SSTEQIIESGKDNVAEMPASSDNLQNTXXXXXXXXXXXXXXPTVFKHPTHLVTPSEI--- 381
            SS E+I  S   NV       D++                    FKHPTHLVTPSEI   
Sbjct: 677  SSVEEISRSKDSNV----TPDDDVSGMRSPS-----------AFFKHPTHLVTPSEILMG 721

Query: 382  --ASKAALSSENSYASDCMNVQDVTSH-RDAXXXXXXXXXXXXTGSNQENNEHDRDRNLQ 438
              +++A++++E+    D  N+QDV +  RD             T  N E N+HD   N  
Sbjct: 722  VSSAEASITTEDRRDRDA-NIQDVNNDPRDTEVEVKEISEARST-QNGEINDHDETENC- 778

Query: 439  TNVNEKKEKLFYSQASDLGIQMARDTY-NNEVVHQPDNINTIGAPDQSCSSIGQEVKNTS 497
               +E +EK+F SQ S+L  +MARD Y + E    P      G P ++    G E    S
Sbjct: 779  --TSENREKVFCSQVSNLSTEMARDCYPSTEGTFIPGESKAYGQPIKA----GDESGVDS 832

Query: 498  KEAPANISESETVAATLLSPAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDQGGNP 557
            +  PA + + +   A   S  P                               N+Q  + 
Sbjct: 833  RGGPAKLLKGKKQKAK-NSQGPG---------------LSSTSSNVANLADSFNEQSQS- 875

Query: 558  RGSSMEVASPQLSSMQEMMGQLLSMHKEMQKQMNVMVSAPVTKEGKRLEVSLGRAMEKAV 617
                M    PQL +MQE M Q+++  KEMQ+Q++   + P+ KE KRLEV+LGR +EK+ 
Sbjct: 876  LSHPMTDLLPQLLAMQETMNQVMASQKEMQRQLSNAATGPIGKESKRLEVALGRMIEKSS 935

Query: 618  KSNTDALWARLQEESAKQEKLERENMQQITNMISNFINKDMPXXXXXXXXXXXXXXXXXX 677
            KSN DALWAR+QEE+ K EK  R++ QQI N  +NF++K++                   
Sbjct: 936  KSNADALWARIQEETVKNEKALRDHAQQIVNATTNFMSKELNAMFEKTIKKELAAIGPAL 995

Query: 678  XXXXXXXXEKAISSAVMESFQKGVGDKVLNQLEKSVSSKLEATVAR 723
                    EK +SSA+ ESFQ+G+GDK +NQL+KSV+ KLEATVAR
Sbjct: 996  ARSVVPVIEKTVSSAITESFQRGIGDKAVNQLDKSVNIKLEATVAR 1041


>AT3G13290.1 | Symbols: VCR | varicose-related |
           chr3:4297529-4303113 FORWARD LENGTH=1340
          Length = 1340

 Score =  310 bits (793), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 158/297 (53%), Positives = 202/297 (68%), Gaps = 30/297 (10%)

Query: 1   MCQWMKSRLASASADGTVKIWEERKATPLAVLRPYDGKPVDSVTFLTAPHRPDHIILITV 60
           MCQWM +RL S+S DGTVKIW++RK  PL VLRP+DG PV+S  F+T+P RPDHIILIT 
Sbjct: 348 MCQWMTTRLVSSSVDGTVKIWQDRKTQPLVVLRPHDGLPVNSAIFVTSPERPDHIILITG 407

Query: 61  GPLNREVKIWVSDNEEGWLLPSDSESWNCIQTLDIKSSSEPNPEDAFFNQVVALPRAGLF 120
           GPLNRE+KIWVS  EEGWLLP+D+ESW C QTLD+KSS+EP  E AFFNQV+AL  AGL 
Sbjct: 408 GPLNREIKIWVSAGEEGWLLPADTESWRCTQTLDLKSSTEPQAEKAFFNQVIALSEAGLL 467

Query: 121 LLANAKKNTIYAVHIEFGTNPTATRLDYIAEFTVTMPILSLTGTSDSLPDGDHIVQIYCV 180
           LLANA++N IY+VH+++G++P  T +DY++EFTVTMPILS  GT+D  P+ +  V++YCV
Sbjct: 468 LLANARRNAIYSVHLDYGSSPVETLMDYLSEFTVTMPILSFIGTNDH-PE-EPFVKVYCV 525

Query: 181 QTQAIQQYGLTLSQCLPPPLDNVELEKIESSRDFDA-LDGSTNQEAG----NMPQAGNMD 235
           QT AIQQY L L  C+PPP +NV  EK +S+   +A L  ST + +G     +P  G++ 
Sbjct: 526 QTLAIQQYTLDLFLCMPPPRENVGFEKSDSTVSREANLVESTLETSGMKPTELPSVGSVP 585

Query: 236 -------------------GSESAVIRPSESL---ASPDTSGLP-ETSIPDTETKPN 269
                              G  SA I P   +     P TSG+P ETS  D+   P+
Sbjct: 586 KPSILVNRSENANMLSFPAGPASAGITPPAIVPPNGEPKTSGMPSETSDVDSAYAPS 642



 Score =  184 bits (466), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/361 (34%), Positives = 182/361 (50%), Gaps = 18/361 (4%)

Query: 369  FKHPTHLVTPSEI-----ASKAALSSENSYASDCMNVQDVTSHRDAXXXXXXXXXXXXTG 423
            FK PTHLVTPSEI     +++A++++E+    D  N+++V +                T 
Sbjct: 729  FKQPTHLVTPSEILMGVSSTEASITTEDKRDRDA-NIEEVNNDARGLEVELKEVGEAQTS 787

Query: 424  SNQENNEHDRDRNLQTNVNEKKEKLFYSQASDLGIQMARDTYN-NEVVHQPDNINTIGAP 482
             N E N H+   N   + +E +E +F SQAS+L  +MARD +   E    P +    G P
Sbjct: 788  QNGEINYHETTEN---HTSESRENIFCSQASNLSTEMARDRHPITEGSAIPGDSMAYGQP 844

Query: 483  DQSCSSIGQEVKNTSKEAPANISESETVAATLLSPAPAXXXXXXXXXXXXXXXXXXXXXX 542
             Q+    G + ++ S + P + S S  VA                               
Sbjct: 845  LQAGDERGLDSRDVSAKLPESGSSSGLVATN-------SKGKKQKAKNSQGPGLSSTSSN 897

Query: 543  XXXXXXXXNDQGGNPRGSSMEVASPQLSSMQEMMGQLLSMHKEMQKQMNVMVSAPVTKEG 602
                    N+Q  +     M    PQL ++QE M Q+++  KEMQ+Q++  V+ P+ KEG
Sbjct: 898  VANLADSFNEQSQS-LNHPMADLLPQLLALQETMTQVMASQKEMQRQLSNAVTGPIVKEG 956

Query: 603  KRLEVSLGRAMEKAVKSNTDALWARLQEESAKQEKLERENMQQITNMISNFINKDMPXXX 662
            K+LEV+LGR +EK+ KSN DALWA  QEE+ K EK  R++ QQI N  +NF +K++    
Sbjct: 957  KKLEVALGRMIEKSSKSNADALWAHFQEEAVKNEKALRDHGQQIMNETTNFTSKELNAMF 1016

Query: 663  XXXXXXXXXXXXXXXXXXXXXXXEKAISSAVMESFQKGVGDKVLNQLEKSVSSKLEATVA 722
                                   EK +SSA+ ESFQ+G+GDK +NQLEKSV+SKLE TVA
Sbjct: 1017 EKTMKKEFASVGPTLARVVTPVIEKTVSSAITESFQRGIGDKAVNQLEKSVNSKLETTVA 1076

Query: 723  R 723
            R
Sbjct: 1077 R 1077