Miyakogusa Predicted Gene
- Lj6g3v1695010.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1695010.1 CUFF.59804.1
(562 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G38970.1 | Symbols: | Zinc finger (C3HC4-type RING finger) f... 89 8e-18
AT5G60710.1 | Symbols: | Zinc finger (C3HC4-type RING finger) f... 88 1e-17
AT3G54780.1 | Symbols: | Zinc finger (C3HC4-type RING finger) f... 88 2e-17
AT3G54780.2 | Symbols: | Zinc finger (C3HC4-type RING finger) f... 87 2e-17
AT3G54780.3 | Symbols: | Zinc finger (C3HC4-type RING finger) f... 87 2e-17
AT5G65683.1 | Symbols: | Zinc finger (C3HC4-type RING finger) f... 84 3e-16
AT1G08050.1 | Symbols: | Zinc finger (C3HC4-type RING finger) f... 83 4e-16
AT2G22680.1 | Symbols: | Zinc finger (C3HC4-type RING finger) f... 80 4e-15
AT5G49665.1 | Symbols: | Zinc finger (C3HC4-type RING finger) f... 76 7e-14
AT4G37890.1 | Symbols: EDA40 | Zinc finger (C3HC4-type RING fing... 72 9e-13
AT4G37890.2 | Symbols: EDA40 | Zinc finger (C3HC4-type RING fing... 72 9e-13
>AT2G38970.1 | Symbols: | Zinc finger (C3HC4-type RING finger)
family protein | chr2:16274135-16276651 FORWARD
LENGTH=692
Length = 692
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 68/108 (62%), Gaps = 4/108 (3%)
Query: 286 PTDLVLV----ASPNGPHLRLLKQAMALLVFSLRQVHRLAIVTYSSAAARVFPLKRMTSY 341
P DLV V S G L LLK+AM ++ +L RL+++ +SS A R+FPL +M+
Sbjct: 251 PVDLVTVLDISGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSTARRLFPLTKMSDA 310
Query: 342 GKRTALQVIDRLFYMGQADPVEGLKKGIKILEDRVHKNPESCILHLSD 389
G++ ALQ ++ + G + EGL+KG+K++EDR KNP + I+ LSD
Sbjct: 311 GRQRALQAVNSVVANGGTNIAEGLRKGVKVMEDRRDKNPVASIILLSD 358
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 45/68 (66%), Gaps = 5/68 (7%)
Query: 84 IDHNEHQSKNLCAICLDPLSYHSKGSSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPIC 143
+ N +S C+ICL+ + G A+FTA+CSH+FHF CI+SNV+HG+ CP+C
Sbjct: 61 LSRNSSKSSKTCSICLNKMK-----EGGGHALFTAECSHSFHFHCIASNVKHGNQVCPVC 115
Query: 144 RAHWTQLP 151
RA W ++P
Sbjct: 116 RAKWKEIP 123
>AT5G60710.1 | Symbols: | Zinc finger (C3HC4-type RING finger)
family protein | chr5:24410953-24414849 REVERSE
LENGTH=704
Length = 704
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 66/108 (61%), Gaps = 4/108 (3%)
Query: 286 PTDLVLV----ASPNGPHLRLLKQAMALLVFSLRQVHRLAIVTYSSAAARVFPLKRMTSY 341
P DLV V S G L LLK+AM ++ +L RL+++++SS A R FPL+ MT
Sbjct: 250 PVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPFDRLSVISFSSTARRNFPLRLMTET 309
Query: 342 GKRTALQVIDRLFYMGQADPVEGLKKGIKILEDRVHKNPESCILHLSD 389
GK+ ALQ ++ L G + EGLKKG ++L DR KNP S I+ LSD
Sbjct: 310 GKQEALQAVNSLVSNGGTNIAEGLKKGARVLIDRRFKNPVSSIVLLSD 357
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 41/57 (71%), Gaps = 5/57 (8%)
Query: 95 CAICLDPLSYHSKGSSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLP 151
CAICL + + G AIFTA+CSH+FHF CI++NV+HG+ CP+CRA W ++P
Sbjct: 72 CAICLTAMK-----AGQGHAIFTAECSHSFHFQCITTNVKHGNQICPVCRAKWNEIP 123
>AT3G54780.1 | Symbols: | Zinc finger (C3HC4-type RING finger)
family protein | chr3:20278985-20281429 FORWARD
LENGTH=675
Length = 675
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 75/132 (56%), Gaps = 9/132 (6%)
Query: 286 PTDLVLV----ASPNGPHLRLLKQAMALLVFSLRQVHRLAIVTYSSAAARVFPLKRMTSY 341
P DLV V S G L LLK+AM ++ +L RL+++ +SS A R+FPL RM+
Sbjct: 241 PIDLVTVLDISGSMGGTKLALLKRAMGFVIQNLGSSDRLSVIAFSSTARRLFPLTRMSDA 300
Query: 342 GKRTALQVIDRLFYMGQADPVEGLKKGIKILEDRVHKNPESCILHLSD-----NPTRPYH 396
G++ ALQ ++ L G + V+GL+KG K++EDR+ +N + I+ LSD P
Sbjct: 301 GRQLALQAVNSLVANGGTNIVDGLRKGAKVMEDRLERNSVASIILLSDGRDTYTTNHPDP 360
Query: 397 ATSMELPSTPIH 408
+ + LP +H
Sbjct: 361 SYKVMLPQISVH 372
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 5/57 (8%)
Query: 95 CAICLDPLSYHSKGSSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLP 151
C+ICL+ + G AIFTA+CSH FHF CI+SNV+HG+ CP+CRA W ++P
Sbjct: 74 CSICLNKMK-----EGCGHAIFTAECSHMFHFHCIASNVKHGNQVCPVCRAKWKEIP 125
>AT3G54780.2 | Symbols: | Zinc finger (C3HC4-type RING finger)
family protein | chr3:20278985-20281429 FORWARD
LENGTH=632
Length = 632
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 68/108 (62%), Gaps = 4/108 (3%)
Query: 286 PTDLVLV----ASPNGPHLRLLKQAMALLVFSLRQVHRLAIVTYSSAAARVFPLKRMTSY 341
P DLV V S G L LLK+AM ++ +L RL+++ +SS A R+FPL RM+
Sbjct: 241 PIDLVTVLDISGSMGGTKLALLKRAMGFVIQNLGSSDRLSVIAFSSTARRLFPLTRMSDA 300
Query: 342 GKRTALQVIDRLFYMGQADPVEGLKKGIKILEDRVHKNPESCILHLSD 389
G++ ALQ ++ L G + V+GL+KG K++EDR+ +N + I+ LSD
Sbjct: 301 GRQLALQAVNSLVANGGTNIVDGLRKGAKVMEDRLERNSVASIILLSD 348
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 5/57 (8%)
Query: 95 CAICLDPLSYHSKGSSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLP 151
C+ICL+ + G AIFTA+CSH FHF CI+SNV+HG+ CP+CRA W ++P
Sbjct: 74 CSICLNKMK-----EGCGHAIFTAECSHMFHFHCIASNVKHGNQVCPVCRAKWKEIP 125
>AT3G54780.3 | Symbols: | Zinc finger (C3HC4-type RING finger)
family protein | chr3:20278985-20281429 FORWARD
LENGTH=633
Length = 633
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 68/108 (62%), Gaps = 4/108 (3%)
Query: 286 PTDLVLV----ASPNGPHLRLLKQAMALLVFSLRQVHRLAIVTYSSAAARVFPLKRMTSY 341
P DLV V S G L LLK+AM ++ +L RL+++ +SS A R+FPL RM+
Sbjct: 242 PIDLVTVLDISGSMGGTKLALLKRAMGFVIQNLGSSDRLSVIAFSSTARRLFPLTRMSDA 301
Query: 342 GKRTALQVIDRLFYMGQADPVEGLKKGIKILEDRVHKNPESCILHLSD 389
G++ ALQ ++ L G + V+GL+KG K++EDR+ +N + I+ LSD
Sbjct: 302 GRQLALQAVNSLVANGGTNIVDGLRKGAKVMEDRLERNSVASIILLSD 349
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 5/60 (8%)
Query: 92 KNLCAICLDPLSYHSKGSSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLP 151
K C+ICL+ + G AIFTA+CSH FHF CI+SNV+HG+ CP+CRA W ++P
Sbjct: 72 KQTCSICLNKMK-----EGCGHAIFTAECSHMFHFHCIASNVKHGNQVCPVCRAKWKEIP 126
>AT5G65683.1 | Symbols: | Zinc finger (C3HC4-type RING finger)
family protein | chr5:26261472-26263704 FORWARD
LENGTH=717
Length = 717
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 78/131 (59%), Gaps = 8/131 (6%)
Query: 285 RPT-DLVLVA--SPNGPHLRLLKQAMALLVFSLRQVHRLAIVTYSSAAARVFPLKRMTSY 341
RP+ DLV V S G +L+ +K AM ++ LR++ RL+IV +S+ + R+ PL+RMT+
Sbjct: 322 RPSIDLVTVLDLSNGGANLQTVKHAMRSVISLLREMDRLSIVVFSTGSKRLMPLRRMTAK 381
Query: 342 GKRTALQVIDRLFYMGQADPV-----EGLKKGIKILEDRVHKNPESCILHLSDNPTRPYH 396
G+R+A +++D L M V + LKK +K++EDR KNP + I LSD +P
Sbjct: 382 GRRSARRMVDALGGMETTGGVGMSVNDALKKAVKVVEDRREKNPSTSIFVLSDGQDQPEA 441
Query: 397 ATSMELPSTPI 407
+L +T I
Sbjct: 442 VLKAKLNATRI 452
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 95 CAICLDPLSYHSKGSSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPRNL 154
CAICL + +S S+ AIFTA+CSH+FH +C++ CP C A W P++
Sbjct: 140 CAICLQRV--NSNQSNSTAAIFTAECSHSFHLSCVNG---LEDKRCPFCSAAWNHAPKSN 194
Query: 155 NSSLCGSFTSSNQSDPILR 173
++ +F SDPI R
Sbjct: 195 YPAVNNNF----GSDPIRR 209
>AT1G08050.1 | Symbols: | Zinc finger (C3HC4-type RING finger)
family protein | chr1:2499088-2501311 REVERSE LENGTH=641
Length = 641
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 68/109 (62%), Gaps = 4/109 (3%)
Query: 286 PTDLVLV----ASPNGPHLRLLKQAMALLVFSLRQVHRLAIVTYSSAAARVFPLKRMTSY 341
P DL+ V S +G + L+K AM+ ++ +L + RL+++++SS A R+FPL+ M+
Sbjct: 202 PLDLITVLDVSGSMDGVKMELMKNAMSFVIQNLGETDRLSVISFSSMARRLFPLRLMSET 261
Query: 342 GKRTALQVIDRLFYMGQADPVEGLKKGIKILEDRVHKNPESCILHLSDN 390
GK+ A+Q ++ L G + EGLK G +++E R KNP S ++ LSD
Sbjct: 262 GKQAAMQAVNSLVADGGTNIAEGLKIGARVIEGRRWKNPVSGMMLLSDG 310
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 42/61 (68%), Gaps = 5/61 (8%)
Query: 91 SKNLCAICLDPLSYHSKGSSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQL 150
SK CAICL + G+AIFTA+CSH+FHF CI+SNV+HG+ CP+CR W Q+
Sbjct: 65 SKGRCAICLYEIRKED-----GKAIFTAECSHSFHFDCITSNVKHGNRICPLCRTQWKQV 119
Query: 151 P 151
P
Sbjct: 120 P 120
>AT2G22680.1 | Symbols: | Zinc finger (C3HC4-type RING finger)
family protein | chr2:9645433-9647484 FORWARD LENGTH=683
Length = 683
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 18/139 (12%)
Query: 286 PTDLVLV----ASPNGPHLRLLKQAMALLVFSLRQVHRLAIVTYSSAAARVFPLKRMTSY 341
P DLV V +G L +LKQ M +++ +LR++ RL+I+ +SS++ R+ PL+RMT+
Sbjct: 300 PVDLVAVLDVSGRNSGGKLEMLKQTMRIVLSNLREMDRLSIIAFSSSSKRLSPLRRMTAN 359
Query: 342 GKRTALQVIDRLFYMGQADPV------------EGLKKGIKILEDRVHKNPESCILHLSD 389
G+R+A +++D + G V + LKK +K+L+DR KNP + + L+D
Sbjct: 360 GRRSARRIVDIITVPGSVSGVGIDFSGEGMSVNDALKKAVKVLDDRRQKNPFTAVFVLTD 419
Query: 390 NPTRPYHATSMELPSTPIH 408
+ + + PIH
Sbjct: 420 R--QAHQVAQLAHSRIPIH 436
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 88 EHQSKNLCAICLDPLSYHSKGSSPGQAIFTAQCSHAFHFACISSN--VRHGSV-TCPIC 143
+ S N C ICL S S G AIFTA+CSH FHF C++S H + +CP+C
Sbjct: 123 KQSSSNKCGICL-----QSVKSGQGTAIFTAECSHTFHFPCVTSRAAANHNRLASCPVC 176
>AT5G49665.1 | Symbols: | Zinc finger (C3HC4-type RING finger)
family protein | chr5:20167119-20169420 REVERSE
LENGTH=740
Length = 740
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Query: 296 NGPHLRLLKQAMALLVFSLRQVHRLAIV-TYSSAAARVFPLKRMTSYGKRTALQVIDRLF 354
NG L+++K+AM L++ SL RL+IV + R+ PLKRMT +GKR+A V+D L
Sbjct: 344 NGAKLQMVKRAMRLVISSLGSADRLSIVAVVMTVPKRLLPLKRMTEHGKRSAGAVVDGLL 403
Query: 355 YMGQADPVEGLKKGIKILEDRVHKNPESCILHLSDN 390
++ E LKK ++LEDR +NP + I+ L+D
Sbjct: 404 CGQGSNTSEALKKASRVLEDRRERNPVASIVLLTDG 439
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 17/102 (16%)
Query: 86 HNEHQSKNLCAICLDPLSYHSKGSSPGQAIFTAQCSHAFHFACISSNVR-HGSVTCPICR 144
N + ++ C ICL+ S + G A +TA+CSHAFHF CI+ VR G + CP+C
Sbjct: 113 RNSFKFRSTCGICLN-----SVKTGQGTAKYTAECSHAFHFPCIADYVRKQGKLVCPVCN 167
Query: 145 AHWTQLPRNLNSSLCGSFTSSNQSDPILRILDDSIATFRVHR 186
+ W ++SL ++ +S LDDS++ + R
Sbjct: 168 SIWK------DASLLVPHKNATESP-----LDDSVSVIQEKR 198
>AT4G37890.1 | Symbols: EDA40 | Zinc finger (C3HC4-type RING finger)
family protein | chr4:17812812-17815031 REVERSE
LENGTH=739
Length = 739
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
Query: 286 PTDLVLVASPNGPHLRLLKQAMALLVFSLRQVHRLAIVTYSSAAARVFPLKRMTSYGKRT 345
P DLV V +G ++ ++K+AM ++ SLR+ RL++V++SS++ R+ PL+RMT+ G+R
Sbjct: 355 PVDLVTVIDVSGGNIEMVKRAMRQVISSLRETDRLSMVSFSSSSKRLTPLRRMTANGRRL 414
Query: 346 ALQVIDRLFYMGQADPV-EGLKKGIKILEDRVHKNPESCILHLSDNPTRPYHATSMELP 403
A +++D + G V + +KK K++EDR KN + I L+D H + P
Sbjct: 415 ARRIVDDISGDGDGMSVNDAVKKAAKVIEDRRQKNLFTTIFVLTDRNRNSAHQAQLAQP 473
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 91 SKNLCAICLDPLSYHSKGSSPGQAIFTAQCSHAFHFACISSNV--RHGSVTCPICRAHWT 148
S + C ICL S + G AIFTA+CSH FHF C++S R+ CP+C A W
Sbjct: 165 SSSKCGICL-----QSAKAGRGTAIFTAECSHTFHFPCVASRAGDRNLLSDCPVCGASWR 219
Query: 149 Q 149
+
Sbjct: 220 E 220
>AT4G37890.2 | Symbols: EDA40 | Zinc finger (C3HC4-type RING finger)
family protein | chr4:17812812-17815031 REVERSE
LENGTH=711
Length = 711
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
Query: 286 PTDLVLVASPNGPHLRLLKQAMALLVFSLRQVHRLAIVTYSSAAARVFPLKRMTSYGKRT 345
P DLV V +G ++ ++K+AM ++ SLR+ RL++V++SS++ R+ PL+RMT+ G+R
Sbjct: 327 PVDLVTVIDVSGGNIEMVKRAMRQVISSLRETDRLSMVSFSSSSKRLTPLRRMTANGRRL 386
Query: 346 ALQVIDRLFYMGQADPV-EGLKKGIKILEDRVHKNPESCILHLSDNPTRPYHATSMELP 403
A +++D + G V + +KK K++EDR KN + I L+D H + P
Sbjct: 387 ARRIVDDISGDGDGMSVNDAVKKAAKVIEDRRQKNLFTTIFVLTDRNRNSAHQAQLAQP 445
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 91 SKNLCAICLDPLSYHSKGSSPGQAIFTAQCSHAFHFACISSNV--RHGSVTCPICRAHWT 148
S + C ICL S + G AIFTA+CSH FHF C++S R+ CP+C A W
Sbjct: 137 SSSKCGICL-----QSAKAGRGTAIFTAECSHTFHFPCVASRAGDRNLLSDCPVCGASWR 191
Query: 149 Q 149
+
Sbjct: 192 E 192