Miyakogusa Predicted Gene
- Lj6g3v1693720.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1693720.1 Non Chatacterized Hit- tr|I1K4D0|I1K4D0_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,82.79,0,seg,NULL;
MMS1_N,NULL; DNA DAMAGE-BINDING PROTEIN 1 (DAMAGE-SPECIFIC DNA-BINDING
PROTEIN 1)(UV-DAMAG,NODE_47381_length_996_cov_13.278112.path2.1
(308 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G05420.1 | Symbols: DDB1A | damaged DNA binding protein 1A | ... 480 e-136
AT4G21100.1 | Symbols: DDB1B | damaged DNA binding protein 1B | ... 469 e-132
AT4G05420.2 | Symbols: DDB1A | damaged DNA binding protein 1A | ... 427 e-120
AT3G55200.1 | Symbols: | Cleavage and polyadenylation specifici... 52 5e-07
AT3G55220.1 | Symbols: | Cleavage and polyadenylation specifici... 52 5e-07
>AT4G05420.1 | Symbols: DDB1A | damaged DNA binding protein 1A |
chr4:2746288-2752663 FORWARD LENGTH=1088
Length = 1088
Score = 480 bits (1236), Expect = e-136, Method: Compositional matrix adjust.
Identities = 232/308 (75%), Positives = 255/308 (82%), Gaps = 9/308 (2%)
Query: 1 MSEWNYVVTAHKPTKVTHSCVGNFTGPQDRNLIVAKCTRLEIHXXXXXXXXXXXXXXXXX 60
MS WNYVVTAHKPT VTHSCVGNFT PQ+ NLIVAKCTR+EIH
Sbjct: 1 MSSWNYVVTAHKPTSVTHSCVGNFTSPQELNLIVAKCTRIEIHLLTPQGLQPML------ 54
Query: 61 XDVPIYGRIAILQLFRPHGEAQECLFVVTEKYKFCVLQWDRETHQLVTRAMGDVYDRIGR 120
DVPIYGRIA L+LFRPHGEAQ+ LF+ TE+YKFCVLQWD E+ +L+TRAMGDV DRIGR
Sbjct: 55 -DVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDPESSELITRAMGDVSDRIGR 113
Query: 121 PTDNGQIGIVDPDCRLIGLRLYDGLFKVIPFDHNGQLKEAFNIKLQELDVLDIKFLYGCS 180
PTDNGQIGI+DPDCRLIGL LYDGLFKVIPFD+ GQLKEAFNI+L+EL VLDIKFL+GC+
Sbjct: 114 PTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLFGCA 173
Query: 181 KPTIVVLYQDNKNARHVKTYEVDLQDKNFVGGPWSQNNLDNGANLLIPVPPPLCGVLIIG 240
KPTI VLYQDNK+ARHVKTYEV L+DK+FV GPWSQN+LDNGA+LLIPVPPPLCGVLIIG
Sbjct: 174 KPTIAVLYQDNKDARHVKTYEVSLKDKDFVEGPWSQNSLDNGADLLIPVPPPLCGVLIIG 233
Query: 241 EETIVYCSATAFKAIPIKLGPSLTKAYGRVDSDGSRYXXXXXXXXXXXXXXXHEKEKVTG 300
EETIVYCSA+AFKAIPI+ PS+TKAYGRVD DGSRY HEKEKVTG
Sbjct: 234 EETIVYCSASAFKAIPIR--PSITKAYGRVDVDGSRYLLGDHAGMIHLLVITHEKEKVTG 291
Query: 301 LKIEPLGE 308
LKIE LGE
Sbjct: 292 LKIELLGE 299
>AT4G21100.1 | Symbols: DDB1B | damaged DNA binding protein 1B |
chr4:11258916-11265309 REVERSE LENGTH=1088
Length = 1088
Score = 469 bits (1207), Expect = e-132, Method: Compositional matrix adjust.
Identities = 229/308 (74%), Positives = 250/308 (81%), Gaps = 9/308 (2%)
Query: 1 MSEWNYVVTAHKPTKVTHSCVGNFTGPQDRNLIVAKCTRLEIHXXXXXXXXXXXXXXXXX 60
MS WNY VTA KPT VTHSCVGNFT PQ+ NLIVAK TR+EIH
Sbjct: 1 MSVWNYAVTAQKPTCVTHSCVGNFTSPQELNLIVAKSTRIEIHLLSPQGLQTIL------ 54
Query: 61 XDVPIYGRIAILQLFRPHGEAQECLFVVTEKYKFCVLQWDRETHQLVTRAMGDVYDRIGR 120
DVP+YGRIA ++LFRPHGEAQ+ LFV TE+YKFCVLQWD E+ +L+TRAMGDV DRIGR
Sbjct: 55 -DVPLYGRIATMELFRPHGEAQDFLFVATERYKFCVLQWDYESSELITRAMGDVSDRIGR 113
Query: 121 PTDNGQIGIVDPDCRLIGLRLYDGLFKVIPFDHNGQLKEAFNIKLQELDVLDIKFLYGCS 180
PTDNGQIGI+DPDCR+IGL LYDGLFKVIPFD+ GQLKEAFNI+L+EL VLDIKFLYGC+
Sbjct: 114 PTDNGQIGIIDPDCRVIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCT 173
Query: 181 KPTIVVLYQDNKNARHVKTYEVDLQDKNFVGGPWSQNNLDNGANLLIPVPPPLCGVLIIG 240
KPTI VLYQDNK+ARHVKTYEV L+DKNFV GPWSQNNLDNGA+LLIPVP PLCGVLIIG
Sbjct: 174 KPTIAVLYQDNKDARHVKTYEVSLKDKNFVEGPWSQNNLDNGADLLIPVPSPLCGVLIIG 233
Query: 241 EETIVYCSATAFKAIPIKLGPSLTKAYGRVDSDGSRYXXXXXXXXXXXXXXXHEKEKVTG 300
EETIVYCSA AFKAIPI+ PS+TKAYGRVD DGSRY HEKEKVTG
Sbjct: 234 EETIVYCSANAFKAIPIR--PSITKAYGRVDLDGSRYLLGDHAGLIHLLVITHEKEKVTG 291
Query: 301 LKIEPLGE 308
LKIE LGE
Sbjct: 292 LKIELLGE 299
>AT4G05420.2 | Symbols: DDB1A | damaged DNA binding protein 1A |
chr4:2746288-2752663 FORWARD LENGTH=1067
Length = 1067
Score = 427 bits (1098), Expect = e-120, Method: Compositional matrix adjust.
Identities = 213/308 (69%), Positives = 235/308 (76%), Gaps = 30/308 (9%)
Query: 1 MSEWNYVVTAHKPTKVTHSCVGNFTGPQDRNLIVAKCTRLEIHXXXXXXXXXXXXXXXXX 60
MS WNYVVTAHKPT VTHSCVGNFT PQ+ NLIVAKCTR+EIH
Sbjct: 1 MSSWNYVVTAHKPTSVTHSCVGNFTSPQELNLIVAKCTRIEIHLLTPQGLQPML------ 54
Query: 61 XDVPIYGRIAILQLFRPHGEAQECLFVVTEKYKFCVLQWDRETHQLVTRAMGDVYDRIGR 120
DVPIYGRIA L+LFRPHGEAQ+ LF+ TE+YKFCVLQWD E+ +L+TRAMGDV DRIGR
Sbjct: 55 -DVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDPESSELITRAMGDVSDRIGR 113
Query: 121 PTDNGQIGIVDPDCRLIGLRLYDGLFKVIPFDHNGQLKEAFNIKLQELDVLDIKFLYGCS 180
PTDNGQ VIPFD+ GQLKEAFNI+L+EL VLDIKFL+GC+
Sbjct: 114 PTDNGQ---------------------VIPFDNKGQLKEAFNIRLEELQVLDIKFLFGCA 152
Query: 181 KPTIVVLYQDNKNARHVKTYEVDLQDKNFVGGPWSQNNLDNGANLLIPVPPPLCGVLIIG 240
KPTI VLYQDNK+ARHVKTYEV L+DK+FV GPWSQN+LDNGA+LLIPVPPPLCGVLIIG
Sbjct: 153 KPTIAVLYQDNKDARHVKTYEVSLKDKDFVEGPWSQNSLDNGADLLIPVPPPLCGVLIIG 212
Query: 241 EETIVYCSATAFKAIPIKLGPSLTKAYGRVDSDGSRYXXXXXXXXXXXXXXXHEKEKVTG 300
EETIVYCSA+AFKAIPI+ PS+TKAYGRVD DGSRY HEKEKVTG
Sbjct: 213 EETIVYCSASAFKAIPIR--PSITKAYGRVDVDGSRYLLGDHAGMIHLLVITHEKEKVTG 270
Query: 301 LKIEPLGE 308
LKIE LGE
Sbjct: 271 LKIELLGE 278
>AT3G55200.1 | Symbols: | Cleavage and polyadenylation specificity
factor (CPSF) A subunit protein | chr3:20460533-20464361
FORWARD LENGTH=1214
Length = 1214
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 109/263 (41%), Gaps = 31/263 (11%)
Query: 6 YVVTAHKPTKVTHSCVGNFTGPQDRNLIVAKCTRLEIHXXXXXXXXXXXXXXXXXXDVPI 65
Y +T + T + + GNF+G + + + VA+ L++ V +
Sbjct: 4 YSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDL------LRPDENGKIQTIHSVEV 57
Query: 66 YGRIAILQLFRPHGEAQECLFVVTEKYKFCVLQWDRETHQLVTRAMGDVYDRIG-RPTDN 124
+G I L FR G ++ + V ++ + +L++++E + + + + + + G R
Sbjct: 58 FGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKN-VFDKVHQETFGKSGCRRIVP 116
Query: 125 GQIGIVDPDCR--LIGLRLYDGLFKVIPFDHNGQLKEAFNIKLQELDVLDIKFL---YGC 179
GQ VDP R +IG L V+ D +L + ++ + + G
Sbjct: 117 GQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGF 176
Query: 180 SKPTIVVLYQDNKNA-------------RHVKTYEVDLQDKNFVGGPWSQNNLDNGANLL 226
P + D A +H+ YE+DL N V WS N +DNGAN+L
Sbjct: 177 DNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDL-GLNHVSRKWS-NPVDNGANML 234
Query: 227 IPVPPPL---CGVLIIGEETIVY 246
+ VP GVL+ E ++Y
Sbjct: 235 VTVPGGADGPSGVLVCAENFVIY 257
>AT3G55220.1 | Symbols: | Cleavage and polyadenylation specificity
factor (CPSF) A subunit protein | chr3:20467116-20470944
REVERSE LENGTH=1214
Length = 1214
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 109/263 (41%), Gaps = 31/263 (11%)
Query: 6 YVVTAHKPTKVTHSCVGNFTGPQDRNLIVAKCTRLEIHXXXXXXXXXXXXXXXXXXDVPI 65
Y +T + T + + GNF+G + + + VA+ L++ V +
Sbjct: 4 YSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDL------LRPDENGKIQTIHSVEV 57
Query: 66 YGRIAILQLFRPHGEAQECLFVVTEKYKFCVLQWDRETHQLVTRAMGDVYDRIG-RPTDN 124
+G I L FR G ++ + V ++ + +L++++E + + + + + + G R
Sbjct: 58 FGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKN-VFDKVHQETFGKSGCRRIVP 116
Query: 125 GQIGIVDPDCR--LIGLRLYDGLFKVIPFDHNGQLKEAFNIKLQELDVLDIKFL---YGC 179
GQ VDP R +IG L V+ D +L + ++ + + G
Sbjct: 117 GQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGF 176
Query: 180 SKPTIVVLYQDNKNA-------------RHVKTYEVDLQDKNFVGGPWSQNNLDNGANLL 226
P + D A +H+ YE+DL N V WS N +DNGAN+L
Sbjct: 177 DNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDL-GLNHVSRKWS-NPVDNGANML 234
Query: 227 IPVPPPL---CGVLIIGEETIVY 246
+ VP GVL+ E ++Y
Sbjct: 235 VTVPGGADGPSGVLVCAENFVIY 257