Miyakogusa Predicted Gene

Lj6g3v1693510.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1693510.1 Non Chatacterized Hit- tr|I1L088|I1L088_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.43844
PE,95.33,0,Vps53_N,Vps53-like, N-terminal; SUBFAMILY NOT NAMED,NULL;
VACUOLAR SORTING PROTEIN 53,NULL,CUFF.59851.1
         (214 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G50500.1 | Symbols: HIT1, ATVPS53, VPS53 | Membrane trafficki...   385   e-107
AT1G50500.2 | Symbols: HIT1 | Membrane trafficking VPS53 family ...   374   e-104
AT1G50970.1 | Symbols:  | Membrane trafficking VPS53 family prot...   323   5e-89

>AT1G50500.1 | Symbols: HIT1, ATVPS53, VPS53 | Membrane trafficking
           VPS53 family protein | chr1:18708217-18715597 REVERSE
           LENGTH=828
          Length = 828

 Score =  385 bits (988), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/214 (89%), Positives = 201/214 (93%)

Query: 1   MDKSSALEYINQMFPNEASLSGVEPLMQKIQNEIRTVDAGILSAVRQQSNSGTKAKEDLA 60
           MDKSSALEYINQMFP EASL+GVEPLMQKIQ EIR VDA ILSAVRQQSNSGTKAKEDLA
Sbjct: 1   MDKSSALEYINQMFPTEASLTGVEPLMQKIQGEIRRVDASILSAVRQQSNSGTKAKEDLA 60

Query: 61  AATCAVEELMYKIREIKTKAVQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSA 120
            AT AVEEL +KI+EIK+KA QSE MVQEICRDIKKLDFAKK+ITTTITALHRLTMLVSA
Sbjct: 61  DATRAVEELSHKIQEIKSKAEQSEAMVQEICRDIKKLDFAKKNITTTITALHRLTMLVSA 120

Query: 121 VEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKIIELREKFKNIKQILKSHVSSD 180
           VEQLQVMASKRQYKEAAAQLEAVNQLC+HFEAYRD+PKI ELREK  NIKQILKSHV SD
Sbjct: 121 VEQLQVMASKRQYKEAAAQLEAVNQLCNHFEAYRDVPKITELREKLNNIKQILKSHVFSD 180

Query: 181 FSSLGTGKETEETNLLQQLSDACLVVDALEPSVQ 214
           FSSLGTGKETEETNLLQ+LSD+CLVVDALEPSV+
Sbjct: 181 FSSLGTGKETEETNLLQKLSDSCLVVDALEPSVR 214


>AT1G50500.2 | Symbols: HIT1 | Membrane trafficking VPS53 family
           protein | chr1:18708217-18715597 REVERSE LENGTH=847
          Length = 847

 Score =  374 bits (959), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/233 (81%), Positives = 201/233 (86%), Gaps = 19/233 (8%)

Query: 1   MDKSSALEYINQMFPN-------------------EASLSGVEPLMQKIQNEIRTVDAGI 41
           MDKSSALEYINQMFP                    EASL+GVEPLMQKIQ EIR VDA I
Sbjct: 1   MDKSSALEYINQMFPTVSAYVTAFTMIFKCVFSFTEASLTGVEPLMQKIQGEIRRVDASI 60

Query: 42  LSAVRQQSNSGTKAKEDLAAATCAVEELMYKIREIKTKAVQSETMVQEICRDIKKLDFAK 101
           LSAVRQQSNSGTKAKEDLA AT AVEEL +KI+EIK+KA QSE MVQEICRDIKKLDFAK
Sbjct: 61  LSAVRQQSNSGTKAKEDLADATRAVEELSHKIQEIKSKAEQSEAMVQEICRDIKKLDFAK 120

Query: 102 KHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKIIE 161
           K+ITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLC+HFEAYRD+PKI E
Sbjct: 121 KNITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCNHFEAYRDVPKITE 180

Query: 162 LREKFKNIKQILKSHVSSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVQ 214
           LREK  NIKQILKSHV SDFSSLGTGKETEETNLLQ+LSD+CLVVDALEPSV+
Sbjct: 181 LREKLNNIKQILKSHVFSDFSSLGTGKETEETNLLQKLSDSCLVVDALEPSVR 233


>AT1G50970.1 | Symbols:  | Membrane trafficking VPS53 family protein
           | chr1:18896323-18900268 FORWARD LENGTH=569
          Length = 569

 Score =  323 bits (828), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 160/214 (74%), Positives = 184/214 (85%)

Query: 1   MDKSSALEYINQMFPNEASLSGVEPLMQKIQNEIRTVDAGILSAVRQQSNSGTKAKEDLA 60
           MDKSS L++INQMFP EASLS VE  MQKI +EIR VDA IL+ V QQ NSGT+AKE+L 
Sbjct: 1   MDKSSGLDFINQMFPVEASLSCVESFMQKICDEIRRVDATILAVVSQQGNSGTRAKENLN 60

Query: 61  AATCAVEELMYKIREIKTKAVQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSA 120
            A CA EEL +KI+EIK+KA Q+E MVQ+IC DIKKLDFAKK+ITT +TAL RLTMLVSA
Sbjct: 61  DAICAAEELSHKIQEIKSKAEQTEAMVQDICSDIKKLDFAKKNITTAVTALSRLTMLVSA 120

Query: 121 VEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKIIELREKFKNIKQILKSHVSSD 180
           V+QLQVM SKRQYKEAA QLEA+N+LC+HF+AY D+PKI+ELREK KNIKQILK HV SD
Sbjct: 121 VQQLQVMTSKRQYKEAATQLEAINELCNHFKAYMDLPKIMELREKLKNIKQILKFHVFSD 180

Query: 181 FSSLGTGKETEETNLLQQLSDACLVVDALEPSVQ 214
           FSSLGTG ETEE  LL++LSD+CLVVDALEPSV+
Sbjct: 181 FSSLGTGTETEELFLLKKLSDSCLVVDALEPSVR 214