Miyakogusa Predicted Gene

Lj6g3v1692960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1692960.1 Non Chatacterized Hit- tr|I1ICA2|I1ICA2_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,75,4e-19,Sec20,Sec20; SUBFAMILY NOT NAMED,NULL;
BNIP1-RELATED,NULL,NODE_45842_length_295_cov_45.677967.path2.1
         (68 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G24315.1 | Symbols: AtSec20 | Sec20 family protein | chr3:882...   116   3e-27

>AT3G24315.1 | Symbols: AtSec20 | Sec20 family protein |
           chr3:8820599-8822445 REVERSE LENGTH=293
          Length = 293

 Score =  116 bits (291), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/68 (85%), Positives = 64/68 (94%)

Query: 1   MTSAAESITDSLRRTRQLMVQEVERNTSTLMTLDESTGVLKKAESEYKGHRSLLMRTRNL 60
           +TS AESIT+SLRR+RQLMVQEVER+T+TL+  DESTGVLKKAESEYKGHRSLL RTRNL
Sbjct: 144 VTSDAESITESLRRSRQLMVQEVERSTNTLVAFDESTGVLKKAESEYKGHRSLLSRTRNL 203

Query: 61  LSTMQRQD 68
           LSTMQRQD
Sbjct: 204 LSTMQRQD 211