Miyakogusa Predicted Gene

Lj6g3v1692390.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1692390.1 tr|F4X4N3|F4X4N3_ACREC BRCA1-A complex subunit
BRE OS=Acromyrmex echinatior GN=G5I_13301 PE=4
SV=1,27.3,2e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
BRE,Brain/reproductive organ-expressed protein,CUFF.59773.1
         (378 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42470.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Brain/repr...   488   e-138

>AT5G42470.1 | Symbols:  | CONTAINS InterPro DOMAIN/s:
           Brain/reproductive organ-expressed protein
           (InterPro:IPR010358); Has 35333 Blast hits to 34131
           proteins in 2444 species: Archae - 798; Bacteria -
           22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
           - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
           chr5:16982365-16984738 FORWARD LENGTH=382
          Length = 382

 Score =  488 bits (1256), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 232/377 (61%), Positives = 294/377 (77%), Gaps = 4/377 (1%)

Query: 6   ENVPPFIAAQLTHLLSHFPLNLKVEHAWSGDKYNSGAFDRFTLLIPYCLDFIKWDVIYNV 65
           E  PP IA QL +LL+H P ++K+ + WSG+K N    DRFTL+IPYCL+ IKWDVIYN 
Sbjct: 4   EEFPPLIADQLHYLLNHSPDSIKIANVWSGNKINPKILDRFTLVIPYCLETIKWDVIYNS 63

Query: 66  DCPIAAPDVIFGAEDEDFHPFH---MLPSGEGASLPSNCLSDWNYKDPTRLLVLIQFLRD 122
           +  +  PD +FG +DEDF P     + P  +  S     LS+W+++D TRLLV+IQ LRD
Sbjct: 64  EYAMDPPDFVFGPDDEDFVPCKCSAIAPDDDQISSLEKALSEWDHEDSTRLLVIIQGLRD 123

Query: 123 QYVLYQRKRVEGVDDERLKFEVSTIVSREGIEMHRSSGFEKSEEVKFAVPL-LDMNINKM 181
           QYV YQR+RV  VDD+R+KFE+ST+++R+GIEM  +SG +K EEVKFAVPL +DMNINKM
Sbjct: 124 QYVAYQRRRVGQVDDDRVKFEISTVLTRKGIEMQMASGVDKPEEVKFAVPLVMDMNINKM 183

Query: 182 VPGCPWRYPQRMHLQVVYPVGRKYLSAPSAPRLKLVSTSELKALFSIDDVKLPPWLDGMC 241
           V GCPW++ Q+++LQVVYP+ RKY +APSAPRLKLVS  +LK+LFS++DVKL PW+DGMC
Sbjct: 184 VVGCPWKHQQKIYLQVVYPILRKYEAAPSAPRLKLVSYYDLKSLFSVEDVKLSPWMDGMC 243

Query: 242 LAEYLPNLEEYLEKQVLEAVSLIDVRRRFIEALAGPLGRPLEADPVFCRKATFLCTSGAF 301
           LAEYLP+LEE LE+Q+ EAV+ ID+RR FIEAL+  LGRPLEADP FCRKATFL  SG F
Sbjct: 244 LAEYLPHLEETLERQIHEAVAAIDLRRSFIEALSLNLGRPLEADPTFCRKATFLNASGQF 303

Query: 302 TFLAHFLIPTQFPKQQPTIMLQSSQHFNSQTTPIKSRLISDYPWSPRWEPSLMAERIGEF 361
           TF+ HF   TQFPKQQPT+MLQS QH N  + P+KS L+++YPWSPRWE   MAER+ +F
Sbjct: 304 TFMVHFFFSTQFPKQQPTLMLQSCQHLNQSSVPVKSNLLTEYPWSPRWEVGRMAERLCDF 363

Query: 362 LADESLNFKRQCSEGQL 378
           L DE++NFK+ C+E  L
Sbjct: 364 LTDEAVNFKKYCNEALL 380